التفاصيل البيبلوغرافية
| العنوان: |
Unraveling the Genome of a High Yielding Colombian Sugarcane Hybrid |
| المؤلفون: |
Jhon Henry Trujillo-Montenegro, María Juliana Rodríguez Cubillos, Cristian Darío Loaiza, Manuel Quintero, Héctor Fabio Espitia-Navarro, Fredy Antonio Salazar Villareal, Carlos Arturo Viveros Valens, Andrés Fernando González Barrios, José De Vega, Jorge Duitama, John J. Riascos |
| المصدر: |
Frontiers in Plant Science, Vol 12 (2021) |
| بيانات النشر: |
Frontiers Media S.A., 2021. |
| سنة النشر: |
2021 |
| المجموعة: |
LCC:Plant culture |
| مصطلحات موضوعية: |
sugarcane, genome, assembly, CENICAÑA, CC 01-1940, RNASeq, Plant culture, SB1-1110 |
| الوصف: |
Recent developments in High Throughput Sequencing (HTS) technologies and bioinformatics, including improved read lengths and genome assemblers allow the reconstruction of complex genomes with unprecedented quality and contiguity. Sugarcane has one of the most complicated genomes among grassess with a haploid length of 1Gbp and a ploidies between 8 and 12. In this work, we present a genome assembly of the Colombian sugarcane hybrid CC 01-1940. Three types of sequencing technologies were combined for this assembly: PacBio long reads, Illumina paired short reads, and Hi-C reads. We achieved a median contig length of 34.94 Mbp and a total genome assembly of 903.2 Mbp. We annotated a total of 63,724 protein coding genes and performed a reconstruction and comparative analysis of the sucrose metabolism pathway. Nucleotide evolution measurements between orthologs with close species suggest that divergence between Saccharum officinarum and Saccharum spontaneum occurred |
| نوع الوثيقة: |
article |
| وصف الملف: |
electronic resource |
| اللغة: |
English |
| تدمد: |
1664-462X |
| Relation: |
https://www.frontiersin.org/articles/10.3389/fpls.2021.694859/full; https://doaj.org/toc/1664-462X |
| DOI: |
10.3389/fpls.2021.694859 |
| URL الوصول: |
https://doaj.org/article/9e8f0b9219a745cca6097c32d91153e9 |
| رقم الانضمام: |
edsdoj.9e8f0b9219a745cca6097c32d91153e9 |
| قاعدة البيانات: |
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