Academic Journal
A de novo reference transcriptome for Bolitoglossa vallecula, an Andean mountain salamander in Colombia
| العنوان: | A de novo reference transcriptome for Bolitoglossa vallecula, an Andean mountain salamander in Colombia |
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| المؤلفون: | Claudia M. Arenas Gómez, M. Ryan Woodcock, Jeramiah J. Smith, S. Randal Voss, Jean Paul Delgado |
| المصدر: | Data in Brief, Vol 29, Iss , Pp - (2020) |
| بيانات النشر: | Elsevier, 2020. |
| سنة النشر: | 2020 |
| المجموعة: | LCC:Computer applications to medicine. Medical informatics LCC:Science (General) |
| مصطلحات موضوعية: | Computer applications to medicine. Medical informatics, R858-859.7, Science (General), Q1-390 |
| الوصف: | The amphibian order Caudata, contains several important model species for biological research. However, there is need to generate transcriptome data from representative species of the primary salamander families. Here we describe a de novo reference transcriptome for a terrestrial salamander, Bolitoglossa vallecula (Caudata: Plethodontidae). We employed paired-end (PE) illumina RNA sequencing to assemble a de novo reference transcriptome for B. vallecula. Assembled transcripts were compared against sequences from other vertebrate taxa to identify orthologous genes, and compared to the transcriptome of a close plethodontid relative (Bolitoglossa ramosi) to identify commonly expressed genes in the skin. This dataset should be useful to future comparative studies aimed at understanding important biological process, such as immunity, wound healing, and the production of antimicrobial compounds. Keywords: Bolitoglossa, Plethodontid, Salamanders, Skin, Transcriptomics |
| نوع الوثيقة: | article |
| وصف الملف: | electronic resource |
| اللغة: | English |
| تدمد: | 2352-3409 |
| Relation: | http://www.sciencedirect.com/science/article/pii/S2352340920301505; https://doaj.org/toc/2352-3409 |
| DOI: | 10.1016/j.dib.2020.105256 |
| URL الوصول: | https://doaj.org/article/8e95ef1b9b174d039dae165266ae18a3 |
| رقم الانضمام: | edsdoj.8e95ef1b9b174d039dae165266ae18a3 |
| قاعدة البيانات: | Directory of Open Access Journals |
Full Text Finder | تدمد: | 23523409 |
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| DOI: | 10.1016/j.dib.2020.105256 |