التفاصيل البيبلوغرافية
| العنوان: |
Terabase-Scale Coassembly of a Tropical Soil Microbiome |
| المؤلفون: |
Robert Riley, Robert M. Bowers, Antonio Pedro Camargo, Ashley Campbell, Rob Egan, Emiley A. Eloe-Fadrosh, Brian Foster, Steven Hofmeyr, Marcel Huntemann, Matthew Kellom, Jeffrey A. Kimbrel, Leonid Oliker, Katherine Yelick, Jennifer Pett-Ridge, Asaf Salamov, Neha J. Varghese, Alicia Clum |
| المصدر: |
Microbiology Spectrum, Vol 11, Iss 4 (2023) |
| بيانات النشر: |
American Society for Microbiology, 2023. |
| سنة النشر: |
2023 |
| المجموعة: |
LCC:Microbiology |
| مصطلحات موضوعية: |
metagenomics, terabase, tropical soil, redox, rare biosphere, Microbiology, QR1-502 |
| الوصف: |
ABSTRACT Petabases of environmental metagenomic data are publicly available, presenting an opportunity to characterize complex environments and discover novel lineages of life. Metagenome coassembly, in which many metagenomic samples from an environment are simultaneously analyzed to infer the underlying genomes’ sequences, is an essential tool for achieving this goal. We applied MetaHipMer2, a distributed metagenome assembler that runs on supercomputing clusters, to coassemble 3.4 terabases (Tbp) of metagenome data from a tropical soil in the Luquillo Experimental Forest (LEF), Puerto Rico. The resulting coassembly yielded 39 high-quality (>90% complete, |
| نوع الوثيقة: |
article |
| وصف الملف: |
electronic resource |
| اللغة: |
English |
| تدمد: |
2165-0497 |
| Relation: |
https://doaj.org/toc/2165-0497 |
| DOI: |
10.1128/spectrum.00200-23 |
| URL الوصول: |
https://doaj.org/article/088811fc0e4a493e9fac4e98c3ef0738 |
| رقم الانضمام: |
edsdoj.088811fc0e4a493e9fac4e98c3ef0738 |
| قاعدة البيانات: |
Directory of Open Access Journals |
Full Text Finder