Academic Journal

Small Subunit Ribosomal DNA-Based Phylogenetic Analysis of Foliar Nematodes (Aphelenchoides spp.) and Their Quantitative Detection in Complex DNA Backgrounds

التفاصيل البيبلوغرافية
العنوان: Small Subunit Ribosomal DNA-Based Phylogenetic Analysis of Foliar Nematodes (Aphelenchoides spp.) and Their Quantitative Detection in Complex DNA Backgrounds
المؤلفون: Rybarczyk-Mydlowska, K.D., Mooijman, P.J.W., van Megen, H.H.B., van den Elsen, S.J.J., Vervoort, M.T.W., Veenhuizen, P.T.M., van Doorn, J., Dees, R.H.L., Karssen, G., Bakker, J., Helder, J.
المصدر: Phytopathology 102 (2012) 12 ; ISSN: 0031-949X
سنة النشر: 2012
المجموعة: Wageningen UR (University & Research Centre): Digital Library
مصطلحات موضوعية: differentiation, fragariae, fragment, globodera, intraspecific variation, populations, potato cyst, rdna, real-time pcr, subtenuis
الوصف: Foliar nematodes, plant-parasitic representatives of the genus Aphelenchoides, constitute a minority in a group dominated by fungivorous species. Distinction between (mostly harmless) fungal feeding Aphelenchoides species and high impact plant parasites such as A. besseyi, A. fragariae, A. ritzemabosi, and A. subtenuis is severely hampered by the scarcity of informative morphological characters, some of which are only observable in specific developmental stages. Poor description of a number of non plant-parasitic Aphelenchoides species further complicates identification. Based on (nearly) full-length small subunit ribosomal DNA (SSU rDNA) sequences (˜ 1,700 bp), a phylogenetic tree was generated, and the four target species appeared as distinct, well-supported groups. Notably, this genus does not constitute a monophyletic group: A. besseyi and A. ritzemabosi cluster together, and they are phylogenetically isolated from A. fragariae, A. subtenuis and other, most fungivorous species. A phylum-wide SSU rDNA framework was used to identify species-specific DNA motifs. For the molecular detection of four plant-parasitic Aphelenchoides species, PCR primers were developed with high, identical annealing temperatures (63°C). Within the molecular framework presented here, these primers can be used for the rapid screening of plant material and soil for the presence of one or multiple foliar nematode species
نوع الوثيقة: article in journal/newspaper
وصف الملف: application/pdf
اللغة: English
Relation: https://edepot.wur.nl/221784
DOI: 10.1094/PHYTO-05-12-0114-R
الاتاحة: https://research.wur.nl/en/publications/small-subunit-ribosomal-dna-based-phylogenetic-analysis-of-foliar
https://doi.org/10.1094/PHYTO-05-12-0114-R
Rights: (c) publisher ; Wageningen University & Research
رقم الانضمام: edsbas.F250F8E4
قاعدة البيانات: BASE
الوصف
DOI:10.1094/PHYTO-05-12-0114-R