Visium spatial transcriptomics reveals intratumor heterogeneity and profiles of Gleason score progression in prostate cancer

التفاصيل البيبلوغرافية
العنوان: Visium spatial transcriptomics reveals intratumor heterogeneity and profiles of Gleason score progression in prostate cancer
المؤلفون: 全勇俊
بيانات النشر: Science Data Bank
سنة النشر: 2024
مصطلحات موضوعية: Prostate cancer (PCa), Visium spatial transcriptomics (Visium ST), Gleason score (GS), Glandular epithelium (GE)
الوصف: Prostate cancer (PCa) frequently presents as a multifocal disease within a single gland. Herein, the transcriptome-wide profiles of glandular epithelial (GE) cells of four PCa tissues with various Gleason scores (GSs) are analyzed with Visium spatial transcriptomics (ST). The transcriptomic classifications across PCa section sites generally matched the spatial patterns of histological structures with different GSs. Average inferred copy number variation (inferCNV) values gradually increased during GS development. Developing trajectories during GS upgrading were assessed, and differentially expressed genes (DEGs) during GS progression were analyzed which exhibited heterogeneity among individual PCa patients. Several crucial genes, such as NANS, PABPC1L, PILRB, PPFIA2, and SESN3, were associated with GS upgrading. Enrichment analysis showed that biological functions, such as cadherin binding, Golgi vesicle transport, protein folding, and cell adhesion molecules were related to GS progression. In conclusion, this study provides insight into ST-based transcriptome-wide expression patterns during GS progression.
نوع الوثيقة: dataset
اللغة: English
Relation: http://www.doi.org/10.1016/j.isci.2023.108429
DOI: 10.57760/sciencedb.09389
الاتاحة: https://doi.org/10.57760/sciencedb.09389
Rights: PUBLIC ; https://creativecommons.org/licenses/by-sa/4.0/
رقم الانضمام: edsbas.EB860C8E
قاعدة البيانات: BASE
الوصف
DOI:10.57760/sciencedb.09389