التفاصيل البيبلوغرافية
| العنوان: |
Data from: Enamel proteins reveal biological sex and genetic variability within southern African Paranthropus |
| المؤلفون: |
Palesa P. Madupe, Claire Koenig, Ioannis Patramanis, Jesper V. Olsen, Fernando Racimo, Rebecca R. Ackermann, Enrico Cappellini |
| بيانات النشر: |
Zenodo |
| سنة النشر: |
2023 |
| المجموعة: |
Zenodo |
| مصطلحات موضوعية: |
Palaeoproteomics, Paleoproteomics, Hominids, Hominins, Paranthropus robustus, Paranthropus, Enamel proteins, Phylogenetics, Biological Sex Identification, Fossils, EDJ morphometrics |
| الوصف: |
This dataset contains the sequences of Paranthropus robustus, first described in 'Enamel proteins reveal biological sex and genetic variability within southern African Paranthropus', as well as the reference data and all the results from the analysis of those sequences. Folders and Sub-Folders: -Paranthropus_Raw_AA_Sequences_Unaligned: Contains 2 fasta files.Paranthropus_Unaligned.fasta contains all the Paranthropus robustus sequences that were used for all of the analyses.Paranthropus_Unaligned_UNFILTERED.fasta contains all the Paranthropus robusts sequences before filtering for SAP quality/confidence. These sequences were not used in any of the analyses, but are provided here for openness. - Reference_Datasets : Contains 3 fasta files. Each fasta file is a reference dataset used in at least one analysis. The identity and origin of each sample is described in the supplementary document of the publication. - Phylogenetic_Analysis_Datasets_and_Trees: Contains the following 4 folders - Paranthropus_Alignments_All_Datasets : Contains 3 folders. Each folder contains the aligned and I/L corrected MSAs (MultipleSequence Alignments)of Paranthropus robustus and a reference dataset. - Paranthropus_Diversity_Dataset_Trees_Results : Contains all analysis done using the 'diversity' reference dataset. Contains one folder for each protein, which includes the protein alignment and the phylogenetic tree of that protein. Additionally a folder named 'CONCATENATED' contains the concatenated alignemnts and trees. The BEAST2-STARBEAST3 folder contains the Starbeast3 analysis, including the xml, output log file, output trees and the input taxon set file. - Paranthropus_Representative_Dataset_Trees_Results: Contains all analysis done using the 'representative' reference dataset. Contains one folder for each protein, which includes the protein alignment and the phylogenetic tree of that protein. Additionally a folder named 'CONCATENATED' contains the concatenated alignemnts and trees. The BEAST2 folder contains the time-calibrated ... |
| نوع الوثيقة: |
other/unknown material |
| اللغة: |
unknown |
| Relation: |
https://zenodo.org/communities/eu; https://doi.org/10.5281/zenodo.7801258; https://doi.org/10.5281/zenodo.7801259; oai:zenodo.org:7801259 |
| DOI: |
10.5281/zenodo.7801259 |
| الاتاحة: |
https://doi.org/10.5281/zenodo.7801259 |
| Rights: |
info:eu-repo/semantics/openAccess ; Creative Commons Attribution 4.0 International ; https://creativecommons.org/licenses/by/4.0/legalcode |
| رقم الانضمام: |
edsbas.E6D3431C |
| قاعدة البيانات: |
BASE |