Academic Journal
Protein-RNA interactions:structural characteristics and hotspot amino acids
| العنوان: | Protein-RNA interactions:structural characteristics and hotspot amino acids |
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| المؤلفون: | Krüger, Dennis M., Neubacher, Saskia, Grossmann, Tom N. |
| المصدر: | Krüger , D M , Neubacher , S & Grossmann , T N 2018 , ' Protein-RNA interactions : structural characteristics and hotspot amino acids ' , RNA (New York, N.Y.) , vol. 24 , no. 11 , pp. 1457-1465 . https://doi.org/10.1261/rna.066464.118 |
| سنة النشر: | 2018 |
| مصطلحات موضوعية: | RNA-binding protein, alanine scanning, protein–RNA complex, ribonucleoprotein, secondary structure |
| الوصف: | Structural information about protein-RNA complexes supports the understanding of crucial recognition processes in the cell, and it can allow the development of high affinity ligands to interfere with these processes. In this respect, the identification of amino acid hotspots is particularly important. In contrast to protein-protein interactions, in silico approaches for protein-RNA interactions lag behind in their development. Herein, we report an analysis of available protein-RNA structures. We assembled a data set of 322 crystal and NMR structures and analyzed them regarding interface properties. In addition, we describe a computational alanine-scanning approach which provides interaction scores for interface amino acids, allowing the identification of potential hotspots in protein-RNA interfaces. We have made the computational approach available as an online tool, which allows interaction scores to be calculated for any structure of a protein-RNA complex by uploading atomic coordinates to the PRI HotScore web server (https://pri-hotscore.labs.vu.nl). |
| نوع الوثيقة: | article in journal/newspaper |
| اللغة: | English |
| DOI: | 10.1261/rna.066464.118 |
| الاتاحة: | https://research.vu.nl/en/publications/b3b479d6-3e4c-4b8c-a510-eb58aa879a47 https://doi.org/10.1261/rna.066464.118 https://hdl.handle.net/1871.1/b3b479d6-3e4c-4b8c-a510-eb58aa879a47 http://www.scopus.com/inward/record.url?scp=85055071613&partnerID=8YFLogxK http://www.scopus.com/inward/citedby.url?scp=85055071613&partnerID=8YFLogxK |
| Rights: | info:eu-repo/semantics/openAccess |
| رقم الانضمام: | edsbas.AA2AD724 |
| قاعدة البيانات: | BASE |
| DOI: | 10.1261/rna.066464.118 |
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