Academic Journal
SeqCode : a nomenclatural code for prokaryotes described from sequence data
| العنوان: | SeqCode : a nomenclatural code for prokaryotes described from sequence data |
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| المؤلفون: | Hedlund, Brian P., Chuvochina, Maria, Hugenholtz, Philip, Konstantinidis, Konstantinos T., Murray, Alison E., Palmer, Marike, Parks, Donovan H., Probst, Alexander J., Reysenbach, Anna-Louise, Rodriguez-R, Luis M., Rossello-Mora, Ramon, Sutcliffe, Iain C., Venter, S.N. (Stephanus Nicolaas), Whitman, William B. |
| بيانات النشر: | Nature Research |
| سنة النشر: | 2022 |
| المجموعة: | University of Pretoria: UPSpace |
| مصطلحات موضوعية: | Prokaryotes, International Code of Nomenclature of Prokaryotes (ICNP), SeqCode, Deoxyribonucleic acid (DNA) |
| الوصف: | Most prokaryotes are not available as pure cultures and therefore ineligible for naming under the rules and recommendations of the International Code of Nomenclature of Prokaryotes (ICNP). Here we summarize the development of the SeqCode, a code of nomenclature under which genome sequences serve as nomenclatural types. This code enables valid publication of names of prokaryotes based upon isolate genome, metagenome-assembled genome or single-amplified genome sequences. Otherwise, it is similar to the ICNP with regard to the formation of names and rules of priority. It operates through the SeqCode Registry (https://seqco.de/), a registration portal through which names and nomenclatural types are registered, validated and linked to metadata. We describe the two paths currently available within SeqCode to register and validate names, including Candidatus names, and provide examples for both. Recommendations on minimal standards for DNA sequences are provided. Thus, the SeqCode provides a reproducible and objective framework for the nomenclature of all prokaryotes regardless of cultivability and facilitates communication across microbiological disciplines. ; The US National Science Foundation; the US National Institute of General Medical Sciences from the National Institutes of Health; the Spanish Ministry of Science, Innovation and Universities; the Australian Research Council; the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation); European Regional Development Funds (FEDER) and the International Society for Microbial Ecology (ISME). ; http://www.nature.com/naturemicrobiology ; am2023 ; Microbiology and Plant Pathology |
| نوع الوثيقة: | article in journal/newspaper |
| وصف الملف: | application/pdf; application/vnd.openxmlformats-officedocument.spreadsheetml.sheet |
| اللغة: | English |
| Relation: | Hedlund, B.P., Chuvochina, P., Hugenholtz, P. et al. 2022, 'SeqCode : a nomenclatural code for prokaryotes described from sequence data', Nature Microbiology, vol. 7, pp. 1702-1708. DOI : 10.1038/s41564-022-01214-9.; 2058-5276 (online); http://hdl.handle.net/2263/92443 |
| DOI: | 10.1038/s41564-022-01214-9 |
| الاتاحة: | http://hdl.handle.net/2263/92443 https://doi.org/10.1038/s41564-022-01214-9 |
| Rights: | © The Author(s) 2022. This article is licensed under a Creative Commons Attribution 4.0 International License. |
| رقم الانضمام: | edsbas.A2E7D5DE |
| قاعدة البيانات: | BASE |
| DOI: | 10.1038/s41564-022-01214-9 |
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