التفاصيل البيبلوغرافية
| العنوان: |
Additional file 2 of Extensive genomic rearrangements mediated by repetitive sequences in plastomes of Medicago and its relatives |
| المؤلفون: |
Shuang Wu (148427), Jinyuan Chen (2667418), Ying Li (38224), Ai Liu (2164660), Ao Li (15375), Mou Yin (9977699), Nawal Shrestha (3937301), Jianquan Liu (200999), Guangpeng Ren (200995) |
| سنة النشر: |
2021 |
| المجموعة: |
Smithsonian Institution: Digital Repository |
| مصطلحات موضوعية: |
Genetics, Medicago, Trigonella, Melilotus, IRLC, Plastome evolution, Genomic rearrangement, Repeat |
| الوصف: |
Additional file 2 : Figure S1. Plastome maps for the 20 Medicago, Trigonella, and Melilotus species. Genes shown outside the circle are transcribed clockwise and those inside are transcribed counter clockwise. Genes belonging to different functional groups are color-coded. The dark gray area in the inner circle indicates GC content and the thick black line shows the extent of different regions. LSC: large single copy; SSC: small single copy; IRA: inverted repeat A; IRB: inverted repeat B. The two areas enclosed by red boxes in (d) indicate small IRs in Medicago lupulina. In (k), red arrows No. 1 and 2 outside the circle point to the breakpoints of the inverted region involving all genes from ycf1 to rpl20. Gene order in the M. truncatula 02 ptDNA between the arrows is in the reverse orientation and its length is ~ 44-kb (44,228 bp). Below the map are shown the alignments of 24-bp incomplete inverted repeats in the inversion endpoints in the M. truncatula 02 and cognate sequences in M. truncatula 01. Figure S2. IRs alignment within the four Melilotus dentata individuals and the repetitive elements of indel regions in Melilotus dentata 02 and Melilotus dentata 03. Yellow bar represents protein coding gene; red bar represents rRNA gene; pink bar represents tRNA gene. Numerals above indicate nucleotide positions within the repeat alignment indicate the length of an indel within the IR. Mismatches are indicated by colored blocks and identical bases are gray. Mean pairwise identity over all pairs in each alignment column is indicated by the histogram: green 100%. IRA: inverted repeat A, IRB: inverted repeat B. Different repetitive elements were marked with different colored boxes. Figure S3. Mauve (Multiple Alignment of Conserved Genomic Sequence with Rearrangements) alignment of the plastomes of the 20 species using plastome of Wisteria floribunda as a reference. Figure S4. Confirmation of tRNA duplication in five species. Plastome sequences were mapped to themselves which contain all copies of the replicated tRNA ... |
| نوع الوثيقة: |
article in journal/newspaper |
| اللغة: |
unknown |
| Relation: |
https://figshare.com/articles/journal_contribution/Additional_file_2_of_Extensive_genomic_rearrangements_mediated_by_repetitive_sequences_in_plastomes_of_Medicago_and_its_relatives/16620916 |
| DOI: |
10.6084/m9.figshare.16620916.v1 |
| الاتاحة: |
https://doi.org/10.6084/m9.figshare.16620916.v1 |
| Rights: |
CC BY + CC0 |
| رقم الانضمام: |
edsbas.9CF0A8FA |
| قاعدة البيانات: |
BASE |