Academic Journal
ReDU: a framework to find and reanalyze public mass spectrometry data
| العنوان: | ReDU: a framework to find and reanalyze public mass spectrometry data |
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| المؤلفون: | Jarmusch A.K., Wang M., Aceves C.M., Advani R.S., Aguirre S., Aksenov A.A., Aleti G., Aron A.T., Bauermeister A., Bolleddu S., Bouslimani A., Caraballo Rodriguez A.M., Chaar R., Coras R., Elijah E.O., Ernst M., Gauglitz J.M., Gentry E.C., Husband M., Jarmusch S.A., Jones K.L., II, Kamenik Z., Le Gouellec A., Lu A., McCall L.-I., McPhail K.L., Meehan M.J., Melnik A.V., Menezes R.C., Montoya Giraldo Y.A., Nguyen N.H., Nothias L.F., Nothias-Esposito M., Panitchpakdi M., Petras D., Quinn R.A., Sikora N., van der Hooft J.J.J., Vargas F., Vrbanac A., Weldon K.C., Knight R., Bandeira N., Dorrestein P.C. |
| المساهمون: | Universidad EAFIT. Departamento de Ciencias, Ciencias Biológicas y Bioprocesos (CIBIOP) |
| المصدر: | NATURE METHODS |
| بيانات النشر: | Nature Publishing Group |
| سنة النشر: | 2020 |
| المجموعة: | Universidad EAFIT, Medellin: Repositorio Institucional |
| مصطلحات موضوعية: | article, controlled study, controlled vocabulary, mass spectrometry, metabolomics, metadata |
| الوصف: | We present ReDU (https://redu.ucsd.edu/), a system for metadata capture of public mass spectrometry-based metabolomics data, with validated controlled vocabularies. Systematic capture of knowledge enables the reanalysis of public data and/or co-analysis of one’s own data. ReDU enables multiple types of analyses, including finding chemicals and associated metadata, comparing the shared and different chemicals between groups of samples, and metadata-filtered, repository-scale molecular networking. © 2020, The Author(s), under exclusive licence to Springer Nature America, Inc. |
| نوع الوثيقة: | article in journal/newspaper |
| اللغة: | English |
| تدمد: | 15487091 15487105 |
| Relation: | https://www.scopus.com/inward/record.uri?eid=2-s2.0-85089870197&doi=10.1038%2fs41592-020-0916-7&partnerID=40&md5=59160f54fe0872d794cd59c0a7f0cda2; https://eafit.fundanetsuite.com/Publicaciones/ProdCientif/PublicacionFrw.aspx?id=12176; http://hdl.handle.net/10784/26847 |
| DOI: | 10.1038/s41592-020-0916-7 |
| الاتاحة: | http://hdl.handle.net/10784/26847 https://eafit.fundanetsuite.com/Publicaciones/ProdCientif/PublicacionFrw.aspx?id=12176 https://doi.org/10.1038/s41592-020-0916-7 |
| Rights: | Nature Publishing Group |
| رقم الانضمام: | edsbas.9C6A5B94 |
| قاعدة البيانات: | BASE |
| تدمد: | 15487091 15487105 |
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| DOI: | 10.1038/s41592-020-0916-7 |