Academic Journal
Additional file 11 of CoSTA: unsupervised convolutional neural network learning for spatial transcriptomics analysis
| العنوان: | Additional file 11 of CoSTA: unsupervised convolutional neural network learning for spatial transcriptomics analysis |
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| المؤلفون: | Yang Xu (178421), Rachel Patton McCord (9619469) |
| سنة النشر: | 2021 |
| المجموعة: | Smithsonian Institution: Digital Repository |
| مصطلحات موضوعية: | Genetics, Spatial transcriptomics, Gene clustering, Convolutional neural network |
| الوصف: | Additional file 11. Supplementary Fig. 11: CoSTA approach applied to clustering USPS, MNIST and Fashion datasets. Left panels: Models were trained for 10 epochs. After each weight updating, we clustered images into 10 clusters and directly compared them to true class labels through NMI. The grey line indicates clustering by UMAP+GMM with pixel values as features. The black line indicates clustering by SpatialDE. The orange line represents learning with combined center loss and bi-tempered logistic loss in Fashion dataset. Right panels: NMIs between clustering at the tth updating and the previous (t-1)th updating. |
| نوع الوثيقة: | article in journal/newspaper |
| اللغة: | unknown |
| Relation: | https://figshare.com/articles/journal_contribution/Additional_file_11_of_CoSTA_unsupervised_convolutional_neural_network_learning_for_spatial_transcriptomics_analysis/15139703 |
| DOI: | 10.6084/m9.figshare.15139703.v1 |
| الاتاحة: | https://doi.org/10.6084/m9.figshare.15139703.v1 |
| Rights: | CC BY + CC0 |
| رقم الانضمام: | edsbas.939A0C21 |
| قاعدة البيانات: | BASE |
| DOI: | 10.6084/m9.figshare.15139703.v1 |
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