التفاصيل البيبلوغرافية
| العنوان: |
Different TEs distribution between Af293 and CEA17. |
| المؤلفون: |
Ana Cristina Colabardini (8201901), Fang Wang (105926), Zhengqiang Miao (538787), Lakhansing Pardeshi (5846258), Clara Valero (544704), Patrícia Alves de Castro (6630107), Daniel Yuri Akiyama (11927262), Kaeling Tan (192448), Luisa Czamanski Nora (11927265), Rafael Silva-Rocha (291218), Marina Marcet-Houben (267422), Toni Gabaldón (22831), Taicia Fill (11576690), Koon Ho Wong (5028644), Gustavo H. Goldman (6630119) |
| سنة النشر: |
2022 |
| المجموعة: |
Smithsonian Institution: Digital Repository |
| مصطلحات موضوعية: |
Medicine, Microbiology, Genetics, Ecology, Cancer, Infectious Diseases, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, secondary metabolites production, invasive pulmonary aspergillosis, global chromatin profiling, frequently lost region, div >< p, chromatin structure regulation, genome stability maintenance, drive genome rearrangements, two histone modifications, aspergillus fumigatus <, genome heterogeneity, genome contents, fumigatus <, two isolates, transposable elements, threatening infection, immunosuppressed patients, human pathogen, h3k9me3 modifications, filamentous fungus, dna repeats, clinical isolates |
| الوصف: |
(A) A bar plot showing the number of unmapped reads (from Bowtie alignment to the indicated reference genome) matched to TE consensus by Repeatmasker. Error bar represent standard derivation of two biological replicates. (B) Heatmap plots showing the H3 and H3K9me3 deposition at CEA17 transposon loci identified by Repeatmasker and at their boundary regions (+/- 4 kb) and their expression values (in FPKM). (C) Sector diagrams showing the distribution of H3K9me3 peaks with or without TEs (left panel), and transposons with or without H3K9me3 (right panel) genome wide in CEA17. (D) A bar plot showing the number of DNA and RNA transposons bound by H3K9me3 in CEA17. (E) A bar plot showing the expression level of DNA and RNA transposons in CEA17. (F) A scatter plot showing the relationship between expression level and H3K9me3 modification level at DNA and RNA transposons in CEA17. (G) A bar plot showing the distribution in families of Af293 and CEA17 TEs according to Repeatmasker classification. (H) Heatmap plots showing the LINE transposon level in Af293 and CEA17. (I) A bar plot showing the number of blast hits for LINE transposon in Af293 and CEA17. (J-K) Bar plot showing the genome percentage and mutation reads percentage of (J) Aft1 transposons and (K) 18S rRNAs in Af293 and CEA17. Error bar represent standard derivation of two biological replicates. (TIF) |
| نوع الوثيقة: |
still image |
| اللغة: |
unknown |
| Relation: |
https://figshare.com/articles/figure/Different_TEs_distribution_between_Af293_and_CEA17_/18130248 |
| DOI: |
10.1371/journal.pgen.1010001.s004 |
| الاتاحة: |
https://doi.org/10.1371/journal.pgen.1010001.s004 |
| Rights: |
CC BY 4.0 |
| رقم الانضمام: |
edsbas.7A30FC0C |
| قاعدة البيانات: |
BASE |