التفاصيل البيبلوغرافية
| العنوان: |
The enzyme cost of metabolic fluxes |
| المؤلفون: |
Liebermeister, Wolfram, Noor, Elad |
| بيانات النشر: |
The Economic Cell Collective |
| سنة النشر: |
2024 |
| المجموعة: |
Zenodo |
| مصطلحات موضوعية: |
Enzyme demand, Enzyme cost, Rate-yield trade-off, Thermodynamic force, Enzyme efficiency, Metabolic pathway, Metabolite cost, Factorized rate law, Max-min driving force, Enzyme cost minimization, Choice between pathways |
| الوصف: |
This is a chapter from the free textbook "Economic Principles in Cell Biology" In this chapter we discuss why certain pathway designs have been selected by evolution, by hypothesizing that some are more beneficial than others – based on several possible criteria and optimization goals: minimizing the number of reactions, maximizing product yield, increasing reaction turnover rates, and avoiding small thermodynamic driving forces. It turns out that all these criteria are related to a single objective: minimizing enzyme demand per product production rate or, equivalently, maximizing “enzyme productivity”. We first focus on simple unbranched pathways with predefined flux distributions. We discuss several feasibility and optimality problems where metabolite concentrations are independent variables and solve for the minimal enzyme demand. In this setting, we see how enzyme productivity can be assessed or predicted and how it depends on different system parameters such as kinetics, thermodynamics, and concentrations of enzymes and metabolites. We discuss the difference between growth rate and yield. We then illustrate it by comparing between pathway options for glycolysis. |
| نوع الوثيقة: |
book part |
| اللغة: |
English |
| Relation: |
https://zenodo.org/communities/epcp; https://doi.org/10.5281/zenodo.8154381; https://doi.org/10.5281/zenodo.12592360; oai:zenodo.org:12592360 |
| DOI: |
10.5281/zenodo.12592360 |
| الاتاحة: |
https://doi.org/10.5281/zenodo.12592360 |
| Rights: |
info:eu-repo/semantics/openAccess ; Creative Commons Attribution Share Alike 4.0 International ; https://creativecommons.org/licenses/by-sa/4.0/legalcode |
| رقم الانضمام: |
edsbas.618BBCEB |
| قاعدة البيانات: |
BASE |