التفاصيل البيبلوغرافية
| العنوان: |
Schema of a national level surveillance report generated using civet for Trinidad and Tobago. |
| المؤلفون: |
Áine O’Toole (11063432), Verity Hill (11063429), Ben Jackson (128953), Rebecca Dewar (11460607), Nikita Sahadeo (828243), Rachel Colquhoun (14241383), Stefan Rooke (14241386), J. T. McCrone (14241389), Kate Duggan (3722185), Martin P. McHugh (14241392), Samuel M. Nicholls (14241395), Radoslaw Poplawski (11063417), David Aanensen (14241398), Matt Holden (14241401), Tom Connor (736617), Nick Loman (497049), Ian Goodfellow (193063), Christine V. F. Carrington (14241404), Kate Templeton (368206), Andrew Rambaut (15183) |
| سنة النشر: |
2022 |
| مصطلحات موضوعية: |
Microbiology, Biotechnology, Evolutionary Biology, Cancer, Science Policy, Infectious Diseases, Biological Sciences not elsewhere classified, virus epidemiology tool, often outbreak investigations, informed outbreak investigations, different &# 8217, catchments &# 8217, virus diversity circulating, clinical outbreak investigation, interpreting local outbreaks, appropriate context within, local context, cluster investigation, background diversity, international context, %22">xlink ">, routinely summarise, routine analyses, producing reports, placing sequences, place sequences, latest dataset, helped researchers, global dataset, distributable report |
| الوصف: |
All SARS-CoV-2 genome sequences on GISAID from 2020 with <20% ambiguity content are summarised in the report (n = 28). a. Available metadata for query sequences from Trinidad and Tobago. Most genomes have been assigned lineage B.1.111, although a smaller number of genomes are assigned other lineages B.1.1.33 and B.1.1. b. Catchment 1 phylogeny. Query sequences are placed in the context of background diversity beyond Trinidad and Tobago. c. Expanding the phylogeny and colouring tips by lineage shows this catchment includes query sequences from lineage B.1.111. d. Aggregate count of queries over time, coloured by lineage. e. Lineage diversity of Trinidad and Tobago and surrounding countries as generated using the background diversity map in civet. The base layer of the map is from Natural Earth ( www.naturalearthdata.com/download/110m/physical/ne_110m_land.zip ) and is in the public domain ( https://www.naturalearthdata.com/about/terms-of-use/ ). |
| نوع الوثيقة: |
still image |
| اللغة: |
unknown |
| Relation: |
https://figshare.com/articles/figure/Schema_of_a_national_level_surveillance_report_generated_using_civet_for_Trinidad_and_Tobago_/21704384 |
| DOI: |
10.1371/journal.pgph.0000704.g005 |
| الاتاحة: |
https://doi.org/10.1371/journal.pgph.0000704.g005 |
| Rights: |
CC BY 4.0 |
| رقم الانضمام: |
edsbas.58E67E16 |
| قاعدة البيانات: |
BASE |