Table_1_A longitudinal study to examine the influence of farming practices and environmental factors on pathogen prevalence using structural equation modeling.XLSX

التفاصيل البيبلوغرافية
العنوان: Table_1_A longitudinal study to examine the influence of farming practices and environmental factors on pathogen prevalence using structural equation modeling.XLSX
المؤلفون: Martine Ferguson, Chiun-Kang Hsu, Christopher Grim, Michael Kauffman, Karen Jarvis, James B. Pettengill, Uma S. Babu, Lisa M. Harrison, Baoguang Li, Alice Hayford, Kannan V. Balan, Josefina P. Freeman, Gireesh Rajashekara, Erin K. Lipp, Ralph Scott Rozier, Anne Marie Zimeri, Laurel S. Burall
سنة النشر: 2023
المجموعة: Frontiers: Figshare
مصطلحات موضوعية: Microbiology, Microbial Genetics, Microbial Ecology, Mycology, farm management practices, fresh produce, Listeria, Salmonella, Campylobacter, STEC, Arcobacter, structural equation modeling
الوصف: The contamination of fresh produce with foodborne pathogens has been an on-going concern with outbreaks linked to these commodities. Evaluation of farm practices, such as use of manure, irrigation water source, and other factors that could influence pathogen prevalence in the farming environment could lead to improved mitigation strategies to reduce the potential for contamination events. Soil, water, manure, and compost were sampled from farms in Ohio and Georgia to identify the prevalence of Salmonella, Listeria monocytogenes (Lm), Campylobacter, and Shiga-toxin-producing Escherichia coli (STEC), as well as Arcobacter, an emerging human pathogen. This study investigated agricultural practices to determine which influenced pathogen prevalence, i.e., the percent positive samples. These efforts identified a low prevalence of Salmonella, STEC, and Campylobacter in soil and water (< 10%), preventing statistical modeling of these pathogens. However, Lm and Arcobacter were found in soil (13 and 7%, respectively), manure (49 and 32%, respectively), and water samples (18 and 39%, respectively) at a comparatively higher prevalence, suggesting different dynamics are involved in their survival in the farm environment. Lm and Arcobacter prevalence data, soil chemical characteristics, as well as farm practices and weather, were analyzed using structural equation modeling to identify which factors play a role, directly or indirectly, on the prevalence of these pathogens. These analyses identified an association between pathogen prevalence and weather, as well as biological soil amendments of animal origin. Increasing air temperature increased Arcobacter and decreased Lm. Lm prevalence was found to be inversely correlated with the use of surface water for irrigation, despite a high Lm prevalence in surface water suggesting other factors may play a role. Furthermore, Lm prevalence increased when the microbiome’s Simpson’s Diversity Index decreased, which occurred as soil fertility increased, leading to an indirect positive ...
نوع الوثيقة: dataset
اللغة: unknown
Relation: https://figshare.com/articles/dataset/Table_1_A_longitudinal_study_to_examine_the_influence_of_farming_practices_and_environmental_factors_on_pathogen_prevalence_using_structural_equation_modeling_XLSX/22566268
DOI: 10.3389/fmicb.2023.1141043.s003
الاتاحة: https://doi.org/10.3389/fmicb.2023.1141043.s003
https://figshare.com/articles/dataset/Table_1_A_longitudinal_study_to_examine_the_influence_of_farming_practices_and_environmental_factors_on_pathogen_prevalence_using_structural_equation_modeling_XLSX/22566268
Rights: CC BY 4.0
رقم الانضمام: edsbas.4E49CB4B
قاعدة البيانات: BASE
الوصف
DOI:10.3389/fmicb.2023.1141043.s003