التفاصيل البيبلوغرافية
| العنوان: |
Singularity containers for the Chinese Liver Cancer Atlas (CLCA) publication |
| المؤلفون: |
Rozen, Steven G., Jiang, Nanhai, Zhang, Chong, Xue, Ruidong, Liu, Mo |
| بيانات النشر: |
Zenodo |
| سنة النشر: |
2022 |
| المجموعة: |
Zenodo |
| الوصف: |
Containers for the Chinese Liver Cancer Atlas (CLCA) publication:Deep Whole Genome Analysis of 494 Hepatocellular Carcinomas. Details of software installed in the containers can be found below: category function software version container name 1 Mutation calling BWA 0.7.12 mutation_calling.sif 1 Mutation calling FASTP 0.13.1 mutation_calling.sif 1 Mutation calling Mutect2 4.0.11.0 mutation_calling.sif 1 Mutation calling sambamba 0.6.8 mutation_calling.sif 1 Mutation calling samtools 1.4 mutation_calling.sif 1 Mutation calling Strelka 2.8.4 strelka.sif 2 Identification of candidate drivers ActiveDriverWGS 1.1.1 driver.sif 2 Identification of candidate drivers dndscv 0.1.0 driver.sif 2 Identification of candidate drivers MutSig2CV_NC Only one version driver.sif 2 Identification of candidate drivers NBR Only one version driver.sif 2 Identification of candidate drivers pvalue_combination Only one version driver.sif 2 Identification of candidate drivers OncodriveFML 2.3.0 oncodrivefml.sif 3 Mutational signature extraction and assignment mSigHdp 1.1.2 signature.sif 3 Mutational signature extraction and assignment SigProfilerExtractor 1.1.0 signature.sif 3 Mutational signature extraction and assignment mSigAct 2.2.3 signature.sif 4 SV & clustered mutational events maftools 2.6.05 SV_CNA_ecDNA.sif 4 SV & clustered mutational events Shatterseek 0.4 SV_CNA_ecDNA.sif 4 SV & clustered mutational events lumpy 0.2.13 SV_CNA_ecDNA.sif 5 CNA calling purple 2.34 SV_CNA_ecDNA.sif 5 CNA calling Sequenza 2.1.1 SV_CNA_ecDNA.sif 6 Detection of ecDNA AmpliconClassifier 0.2.5 SV_CNA_ecDNA.sif 7 Inferring clonality and evolutionary history MutationTimeR 0.99.3 clonality_RNA.sif 7 Inferring clonality and evolutionary history PhylogicNDT Only one version clonality_RNA.sif 7 Inferring clonality and evolutionary history PyClone 0.13.1 clonality_RNA.sif 7 Inferring clonality and evolutionary history Timing_and_Signatures Only one version clonality_RNA.sif 8 RNA data analysis RSEM 1.3.3 clonality_RNA.sif 8 RNA data analysis STAR ... |
| نوع الوثيقة: |
other/unknown material |
| اللغة: |
unknown |
| Relation: |
https://doi.org/10.5281/zenodo.7260221; https://doi.org/10.5281/zenodo.7375456; oai:zenodo.org:7375456 |
| DOI: |
10.5281/zenodo.7375456 |
| الاتاحة: |
https://doi.org/10.5281/zenodo.7375456 |
| Rights: |
info:eu-repo/semantics/openAccess ; Creative Commons Attribution 4.0 International ; https://creativecommons.org/licenses/by/4.0/legalcode |
| رقم الانضمام: |
edsbas.256499BB |
| قاعدة البيانات: |
BASE |