| الوصف: |
New entrypoint option to skip isoseq pre-processing. Update the pipeline to nf-core 2.14.1. Update modules. nf-validation version pinned PR25 Upgrade from isoseq3 to isoseq (version 4) Fix segmentation fault PR27 Add alternative entrypoint PR10 Added A new entreypoint system has been implemented to allow the user where to start the analysis. The isoseq entrypoint runs the full pipeline. The map entrypoint runs the pipeline from the mapping step. This new entreypoint option make possible to use the isoseq pipeline for analysis PacBio data when subreads are not provided, or for users who want to benefit from the mapping + TAMA analysis for their Nanopore data. Fixed Update modules to their nf-test version (bamtools/convert, custom/dumpsoftwareversions, gnu/sort, gstama/collapse/ gstama/merge, gstama/polyacleanup, gunzip, isoseq/refine, lima, minimap2/align, pbccs,ultra/align, ultra/index) Since isoseq3 switch to version 4, it has been rename isoseq | Tool | Previous version | New version | | --- | --- | --- | | bamtools/convert | 2.5.2 | 2.5.2 | | isoseq | 3.8.2 | 4.0.0 | | lima | 2.7.1 | 2.9.0 | | minimap2/align | 2.24 | 2.28 | | gnu/sort | 8.25 | 9.3 | | multiqc | 1.21 | 1.24.1 |