Academic Journal
Development of nuclear and plastid SNP markers for genetic studies of Dipteryx tree species in Amazonia
| العنوان: | Development of nuclear and plastid SNP markers for genetic studies of Dipteryx tree species in Amazonia |
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| المؤلفون: | Honorio Coronado, Euridice N., Blanc-Jolivet, Céline, Mader, Malte, García-Dávila, Carmen R., Sebbenn, Alexandre M., Meyer-Sand, Barbara R. V., Paredes-Villanueva, Kathelyn, Tysklind, Niklas, Troispoux, Valérie, Massot, Marie, Degen, Bernd |
| المساهمون: | Instituto de Investigaciones de la Amazonía Peruana (IIAP), Thünen Institute of Forest Genetics, Instituto Florestal de São Paulo, Faculdad de Ciencias Agricolas - Laboratorio de Dendrocronologia - Carrera de Ingenieria Forestal, Universidad Autonoma Gabriel René Moreno, Ecologie des forêts de Guyane (UMR ECOFOG), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-AgroParisTech-Université de Guyane (UG)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), ANR-10-EQPX-0016,XYLOFOREST,Plateforme d'Innovation " Forêt-Bois-Fibre-Biomasse du Futur "(2010), ANR-10-LABX-0025,CEBA,CEnter of the study of Biodiversity in Amazonia(2010) |
| المصدر: | ISSN: 1877-7252. |
| بيانات النشر: | HAL CCSD Springer |
| سنة النشر: | 2019 |
| مصطلحات موضوعية: | cumaru, timber species, SNP, MassaARRAY, [SDV]Life Sciences [q-bio] |
| الوصف: | We developed nuclear and plastid single nucleotide polymorphism (SNP) and insertion/deletion (INDEL) markers for Dipteryx species using a combination of restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing. Of the total 315 loci genotyped using a MassARRAY platform, 292 loci were variable and polymorphic among the 73 sampled individuals from French Guiana, Brasil, Peru, and Bolivia. A final set of 56 nuclear SNPs, 26 chloroplast SNPs, 2 chloroplast INDELs, and 32 mitochondrial SNPs identifying significant population structure was developed. This set of loci will be useful for studies on population genetics of Dipteryx species in Amazonia. |
| نوع الوثيقة: | article in journal/newspaper |
| اللغة: | English |
| Relation: | PRODINRA: 491954; WOS: 000480748400021 |
| DOI: | 10.1007/s12686-019-01081-3 |
| الاتاحة: | https://hal.science/hal-02215841 https://hal.science/hal-02215841v1/document https://hal.science/hal-02215841v1/file/Honorio-Coronado%20et%20al,%202019%20%28Development%20of%20nuclear%20and%20plastid%20SNP%20markers%20for%20genetic%20studies%20of%20Dipteryx%20tree%20species%20in%20Amazonia%29.pdf https://doi.org/10.1007/s12686-019-01081-3 |
| Rights: | info:eu-repo/semantics/OpenAccess |
| رقم الانضمام: | edsbas.1D6372BF |
| قاعدة البيانات: | BASE |
| DOI: | 10.1007/s12686-019-01081-3 |
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