Assaying the Molecular Determinants and Kinetics of RNA Pseudouridylation by H/ACA snoRNPs and Stand-Alone Pseudouridine Synthases

التفاصيل البيبلوغرافية
العنوان: Assaying the Molecular Determinants and Kinetics of RNA Pseudouridylation by H/ACA snoRNPs and Stand-Alone Pseudouridine Synthases
المؤلفون: Dominic P, Czekay, Sarah K, Schultz, Ute, Kothe
المصدر: Methods in molecular biology (Clifton, N.J.). 2298
سنة النشر: 2021
مصطلحات موضوعية: Kinetics, Ribonucleoproteins, Small Nucleolar, Escherichia coli, RNA, Saccharomyces cerevisiae, RNA Processing, Post-Transcriptional, Intramolecular Transferases, Pseudouridine, RNA, Guide, Kinetoplastida
الوصف: Posttranscriptional modifications of RNA play an important role in promoting the maturation and functional diversity of many RNA species. Accordingly, understanding the enzymes and mechanisms that underlie RNA modifications is an important aspect in advancing our knowledge of the continually expanding RNA modification field. However, of the more than 160 currently identified RNA modifications, a large portion remains without quantitative detection assays for their biochemical characterization. Here, we describe the tritium release assay as a convenient tool allowing for the quantitative assessment of in vitro RNA pseudouridylation by stand-alone or box H/ACA RNA-guided pseudouridine synthases. This assay enables quantification of RNA pseudouridylation over a time course to effectively compare pseudouridylation activity between different substrates and/or different recombinant enzymes as well as to determine kinetic parameters. With the help of a quench-flow apparatus, the tritium release assay can be adapted for rapid kinetic measurements under single-turnover conditions to dissect reaction mechanisms. As examples, we show the formation of pseudouridines by a reconstituted Saccharomyces cerevisiae H/ACA small ribonucleoprotein (snoRNP) and an Escherichia coli stand-alone pseudouridine synthase.
تدمد: 1940-6029
URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::e7d777976aec92af05ca1493e2b85e33
https://pubmed.ncbi.nlm.nih.gov/34085255
رقم الانضمام: edsair.pmid..........e7d777976aec92af05ca1493e2b85e33
قاعدة البيانات: OpenAIRE