Purpose of the thesis lies in analysis of allocation system of state funds. The State fund of environment of Czech Republic has been chosen for analysis. It has been providing enough relevant documents for executing the analysis. The thesis researches way of allocation of the public resources with an emphasis on economy, effectiveness and efficiency (3E) and in compliance with legislation, especially with act no. 320/2001 Sb. The mentioned act contains definition of 3E and rules for budgetary control in Czech Republic. In conclusion of thesis the practice recommendation for state funds are formulated, respectively for State fund of enviroment of Czech Republic.