Dynamic periplasmic chaperone reservoir facilitates biogenesis of outer membrane proteins

التفاصيل البيبلوغرافية
العنوان: Dynamic periplasmic chaperone reservoir facilitates biogenesis of outer membrane proteins
المؤلفون: Ashlee M. Plummer, Patrick J. Fleming, Shawn M. Costello, Karen G. Fleming
المصدر: Proceedings of the National Academy of Sciences of the United States of America. 113(33)
سنة النشر: 2016
مصطلحات موضوعية: 0301 basic medicine, Protein Folding, complex mixtures, 03 medical and health sciences, Protein Aggregates, Native state, Heat-Shock Proteins, Stochastic Processes, Multidisciplinary, 030102 biochemistry & molecular biology, biology, Kinetic model, Escherichia coli Proteins, Membrane protein folding, Serine Endopeptidases, Bacterial pathogenesis, Periplasmic space, Peptidylprolyl Isomerase, bacterial infections and mycoses, Cell biology, 030104 developmental biology, PNAS Plus, Chaperone (protein), Periplasm, biology.protein, bacteria, Periplasmic Proteins, Bacterial outer membrane, Carrier Proteins, Biogenesis, Bacterial Outer Membrane Proteins, Molecular Chaperones
الوصف: Outer membrane protein (OMP) biogenesis is critical to bacterial physiology because the cellular envelope is vital to bacterial pathogenesis and antibiotic resistance. The process of OMP biogenesis has been studied in vivo, and each of its components has been studied in isolation in vitro. This work integrates parameters and observations from both in vivo and in vitro experiments into a holistic computational model termed “Outer Membrane Protein Biogenesis Model” (OMPBioM). We use OMPBioM to assess OMP biogenesis mathematically in a global manner. Using deterministic and stochastic methods, we are able to simulate OMP biogenesis under varying genetic conditions, each of which successfully replicates experimental observations. We observe that OMPs have a prolonged lifetime in the periplasm where an unfolded OMP makes, on average, hundreds of short-lived interactions with chaperones before folding into its native state. We find that some periplasmic chaperones function primarily as quality-control factors; this function complements the folding catalysis function of other chaperones. Additionally, the effective rate for the β-barrel assembly machinery complex necessary for physiological folding was found to be higher than has currently been observed in vitro. Overall, we find a finely tuned balance between thermodynamic and kinetic parameters maximizes OMP folding flux and minimizes aggregation and unnecessary degradation. In sum, OMPBioM provides a global view of OMP biogenesis that yields unique insights into this essential pathway.
تدمد: 1091-6490
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d960991cebb7a8c564b4b0ef23aea91b
https://pubmed.ncbi.nlm.nih.gov/27482090
Rights: OPEN
رقم الانضمام: edsair.doi.dedup.....d960991cebb7a8c564b4b0ef23aea91b
قاعدة البيانات: OpenAIRE