The using of the polymerase chain reaction for the detection of resistance genes in gram-negative bacteria in routine practice in a pediatric hospital

التفاصيل البيبلوغرافية
العنوان: The using of the polymerase chain reaction for the detection of resistance genes in gram-negative bacteria in routine practice in a pediatric hospital
المؤلفون: I. E. Novikova, Z. Z. Sadeeva, R. A. Shakirzyanova, N. M. Alyabieva, A. V. Lazareva, O. V. Karaseva, M. G. Vershinina, A. P. Fisenko
المصدر: Klinicheskaia laboratornaia diagnostika. 67(3)
سنة النشر: 2022
مصطلحات موضوعية: Medical Laboratory Technology, Carbapenems, Biochemistry (medical), Gram-Negative Bacteria, polycyclic compounds, Escherichia coli, bacteria, Humans, General Medicine, biochemical phenomena, metabolism, and nutrition, Child, Hospitals, Pediatric, Polymerase Chain Reaction
الوصف: Objective - assessment of RT-PCR for the detection of carbapenem-resistance genes in gram-negative bacteria. A total, 499 strains of gram-negative microorganisms isolated in two pediatric hospitals in 2019-2020 were studied. Species identification was performed using MALDI-ToF mass-spectrometry (Bruker Daltonics, Germany). Meropenem and imipenem minimal inhibitory concentration (MIC) was determined by E-test method (BioMerieux, France). The presence of acquired carbapenemase genes of IMP, NDM, VIM, KPC, OXA-48, OXA-23, OXA-40, OXA-58-groups was determined by RT-PCR. Klebsiella pneumoniae (34%), Escherichia coli (4%), Serratia marcescens (6%) and other members of Enterobacterales (6%), also gram-negative non-glucose-fermenting bacteria Acinetobacter baumannii (14%), Pseudomonas aeruginosa (36%) were found among selected strains. Carbapenemase production was found in 385 isolates (77%). The main mechanism determining carbapenem resistance in P. aeruginosa was the production of blaVIM (100%). A. baumanii strains harbored OXA-23 (55%) and OXA-40 (45%) carbapenemases. The major determinant of carbapenem resistance in K. pneumoniae isolates was OXA-48 carbapenemase, detected in 63% strains, 13% of the strains possessed blaNDM-group, 16% isolates had a combination of blaNDM-group and blaOXA-48-like. Carbapenemase of KPC-group was found in 8% K. pneumoniae strains. OXA-48 carbapenemase prevailed (95%) among S. marcescens strains. Most of E. coli isolates harbored metallo-beta-lactamase NDM (89%). Other members of Enterobacterales most often had OXA-48 carbapenemase (57%), 39% of the isolates carried blaNDM-group. In one strain, a combination of blaNDM-group and blaOXA-48-like was discovered. RT-PCR is a fast and reliable method for the detection of acquired carbapenemases and can be recommended for routine use in bacteriological laboratories.
تدمد: 0869-2084
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cfef06ea44aedbb87943a2eb29b7532d
https://pubmed.ncbi.nlm.nih.gov/35320635
رقم الانضمام: edsair.doi.dedup.....cfef06ea44aedbb87943a2eb29b7532d
قاعدة البيانات: OpenAIRE