A community-based approach to image analysis of cells, tissues and tumors

التفاصيل البيبلوغرافية
العنوان: A community-based approach to image analysis of cells, tissues and tumors
المؤلفون: Brian S. White, Yury Goltsev, Clemens B. Hug, Erik A. Burlingame, Artem Sokolov, Juan C. Vizcarra, Darren R. Tyson, Csbc
المصدر: Comput Med Imaging Graph
سنة النشر: 2021
مصطلحات موضوعية: Diagnostic Imaging, Data processing, Radiological and Ultrasound Technology, Computer science, ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION, Image registration, Health Informatics, Computer Graphics and Computer-Aided Design, Data science, Field (computer science), Article, Image (mathematics), Identification (information), Cancer systems biology, Neoplasms, Image Processing, Computer-Assisted, Tumor Microenvironment, Humans, Radiology, Nuclear Medicine and imaging, Segmentation, Computer Vision and Pattern Recognition, Dissemination, Software
الوصف: Emerging multiplexed imaging platforms provide an unprecedented view of an increasing number of molecular markers at subcellular resolution and the dynamic evolution of tumor cellular composition. As such, they are capable of elucidating cell-to-cell interactions within the tumor microenvironment that impact clinical outcome and therapeutic response. However, the rapid development of these platforms has far outpaced the computational methods for processing and analyzing the data they generate. While being technologically disparate, all imaging assays share many computational requirements for post-collection data processing. As such, our Image Analysis Working Group (IAWG), composed of researchers in the Cancer Systems Biology Consortium (CSBC) and Physical Sciences - Oncology Network (PS-ON), convened a workshop on “Computational Challenges Shared by Diverse Imaging Platforms” to characterize these common issues and a follow-up hackathon to implement solutions for a selected subset of them. Here, we delineate these areas that reflect major axes of research within the field, including image registration, segmentation of cells and subcellular structures, and identification of cell types from their morphology. We further describe the logistical organization of these events, believing our lessons learned can aid others in uniting the imaging community around self-identified topics of mutual interest, in designing and implementing operational procedures to address those topics and in mitigating issues inherent in image analysis (e.g., sharing exemplar images of large datasets and disseminating baseline solutions to hackathon challenges through open-source code repositories).
تدمد: 1879-0771
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::be0764f76f0e9aa4385a4f879de99cd5
https://pubmed.ncbi.nlm.nih.gov/34864359
Rights: OPEN
رقم الانضمام: edsair.doi.dedup.....be0764f76f0e9aa4385a4f879de99cd5
قاعدة البيانات: OpenAIRE