Recognition of 3' nucleotide context and stop codon readthrough are determined during mRNA translation elongation

التفاصيل البيبلوغرافية
العنوان: Recognition of 3' nucleotide context and stop codon readthrough are determined during mRNA translation elongation
المؤلفون: Nikita Biziaev, Elizaveta Sokolova, Dmitry V. Yanvarev, Ilya Yu Toropygin, Alexey Shuvalov, Tatiana Egorova, Elena Alkalaeva
المصدر: The Journal of biological chemistry. 298(7)
سنة النشر: 2022
مصطلحات موضوعية: Mammals, Nucleotides, Peptide Chain Elongation, Translational, Eukaryota, Cell Biology, Peptide Chain Termination, Translational, Biochemistry, RNA, Transfer, Protein Biosynthesis, Codon, Terminator, Animals, Humans, Molecular Biology, Ribosomes, Peptide Termination Factors
الوصف: The nucleotide context surrounding stop codons significantly affects the efficiency of translation termination. In eukaryotes, various 3' contexts that are unfavorable for translation termination have been described; however, the exact molecular mechanism that mediates their effects remains unknown. In this study, we used a reconstituted mammalian translation system to examine the efficiency of stop codons in different contexts, including several previously described weak 3' stop codon contexts. We developed an approach to estimate the level of stop codon readthrough in the absence of eukaryotic release factors (eRFs). In this system, the stop codon is recognized by the suppressor or near-cognate tRNAs. We observed that in the absence of eRFs, readthrough occurs in a 3' nucleotide context-dependent manner, and the main factors determining readthrough efficiency were the type of stop codon and the sequence of the 3' nucleotides. Moreover, the efficiency of translation termination in weak 3' contexts was almost equal to that in the tested standard context. Therefore, the ability of eRFs to recognize stop codons and induce peptide release is not affected by mRNA context. We propose that ribosomes or other participants of the elongation cycle can independently recognize certain contexts and increase the readthrough of stop codons. Thus, the efficiency of translation termination is regulated by the 3' nucleotide context following the stop codon and depends on the concentrations of eRFs and suppressor/near-cognate tRNAs.
تدمد: 1083-351X
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b2e762580b14a097456756afc8367fde
https://pubmed.ncbi.nlm.nih.gov/35700825
Rights: OPEN
رقم الانضمام: edsair.doi.dedup.....b2e762580b14a097456756afc8367fde
قاعدة البيانات: OpenAIRE