أعرض في EDS

Characteristics of Cefotaxime-Resistant Escherichia coli from Wild Birds in The Netherlands

التفاصيل البيبلوغرافية
العنوان: Characteristics of Cefotaxime-Resistant Escherichia coli from Wild Birds in The Netherlands
المؤلفون: Peter van Tulden, Dik Mevius, Kees Veldman, Joop Testerink, Arie Kant
المصدر: Applied and Environmental Microbiology 79 (2013) 24
Applied and Environmental Microbiology, 79(24), 7556-7561
سنة النشر: 2013
مصطلحات موضوعية: Salmonella, Cefotaxime, Epidemiology, ctx-m, medicine.disease_cause, Polymerase Chain Reaction, Applied Microbiology and Biotechnology, Plasmid, Cloaca, Environmental Microbiology, polycyclic compounds, Escherichia coli Infections, environments, Netherlands, spectrum-beta-lactamase, Ecology, biology, Broth microdilution, Bacteriologie, Bacteriology, Host Pathogen Interaction & Diagnostics, Enterobacteriaceae, Anti-Bacterial Agents, Electrophoresis, Gel, Pulsed-Field, antibiotic-resistance, Biotechnology, medicine.drug, plasmids, Bioinformatica & Diermodellen, salmonella, Microbial Sensitivity Tests, gulls, beta-Lactam Resistance, Microbiology, Birds, Bio-informatics & Animal models, Escherichia coli, medicine, Pulsed-field gel electrophoresis, Animals, Epidemiology, Bio-informatics & Animal models, Typing, Host Pathogen Interaction & Diagnostics, Epidemiologie, Bacteriology, Sequence Analysis, DNA, biochemical phenomena, metabolism, and nutrition, Microarray Analysis, biology.organism_classification, bacterial infections and mycoses, Host Pathogen Interactie & Diagnostiek, Molecular Typing, extended-spectrum, Epidemiologie, Bioinformatica & Diermodellen, Bacteriologie, Host Pathogen Interactie & Diagnostiek, bacteria, CVI - Divisie Bacteriologie en TSE's, natural reserve, Food Science, enterobacteriaceae
الوصف: Cloacal swabs from carcasses of Dutch wild birds obtained in 2010 and 2011 were selectively cultured on media with cefotaxime to screen for the presence of extended-spectrum β-lactamase (ESBL)/AmpC-producing Escherichia coli . Subsequently, all cefotaxime-resistant E. coli isolates were tested by broth microdilution and microarray. The presence of ESBL/AmpC and coexisting plasmid-mediated quinolone resistance (PMQR) genes was confirmed by PCR and sequencing. To determine the size of plasmids and the location of ESBL and PMQR genes, S1 pulsed-field gel electrophoresis (PFGE) was performed on transformants, followed by Southern blot hybridization. The study included 414 cloacal swabs originating from 55 different bird species. Cefotaxime-resistant E. coli isolates were identified in 65 birds (15.7%) from 21 different species. In all, 65 cefotaxime-resistant E. coli ESBL/AmpC genes were detected, mainly comprising variants of bla CTX-M and bla CMY-2 . Furthermore, PMQR genes [ aac(6 ′ )-lb-cr , qnrB1 , and qnrS1 ] coincided in seven cefotaxime-resistant E. coli isolates. Overall, replicon typing of the ESBL/AmpC-carrying plasmids demonstrated the predominant presence of IncI1 ( n = 31) and variants of IncF ( n = 18). Our results indicate a wide dissemination of ESBL and AmpC genes in wild birds from The Netherlands, especially among aquatic-associated species (waterfowl, gulls, and waders). The identified genes and plasmids reflect the genes found predominantly in livestock animals as well as in humans.
وصف الملف: application/pdf; application/octet-stream
اللغة: English
تدمد: 0099-2240
DOI: 10.1128/aem.01880-13
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a0e887700a96e534dc9f78ee8bcaedf4
https://doi.org/10.1128/aem.01880-13
Rights: OPEN
رقم الانضمام: edsair.doi.dedup.....a0e887700a96e534dc9f78ee8bcaedf4
قاعدة البيانات: OpenAIRE
ResultId 1
Header edsair
OpenAIRE
edsair.doi.dedup.....a0e887700a96e534dc9f78ee8bcaedf4
797
3

unknown
797.314208984375
PLink https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&scope=site&db=edsair&AN=edsair.doi.dedup.....a0e887700a96e534dc9f78ee8bcaedf4&custid=s6537998&authtype=sso
FullText Array ( [Availability] => 0 )
Array ( [0] => Array ( [Url] => https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a0e887700a96e534dc9f78ee8bcaedf4# [Name] => EDS - OpenAIRE [Category] => fullText [Text] => View record in OpenAIRE [MouseOverText] => View record in OpenAIRE ) )
Items Array ( [Name] => Title [Label] => Title [Group] => Ti [Data] => Characteristics of Cefotaxime-Resistant Escherichia coli from Wild Birds in The Netherlands )
Array ( [Name] => Author [Label] => Authors [Group] => Au [Data] => <searchLink fieldCode="AR" term="%22Peter+van+Tulden%22">Peter van Tulden</searchLink><br /><searchLink fieldCode="AR" term="%22Dik+Mevius%22">Dik Mevius</searchLink><br /><searchLink fieldCode="AR" term="%22Kees+Veldman%22">Kees Veldman</searchLink><br /><searchLink fieldCode="AR" term="%22Joop+Testerink%22">Joop Testerink</searchLink><br /><searchLink fieldCode="AR" term="%22Arie+Kant%22">Arie Kant</searchLink> )
Array ( [Name] => TitleSource [Label] => Source [Group] => Src [Data] => Applied and Environmental Microbiology 79 (2013) 24<br />Applied and Environmental Microbiology, 79(24), 7556-7561 )
Array ( [Name] => DatePubCY [Label] => Publication Year [Group] => Date [Data] => 2013 )
Array ( [Name] => Subject [Label] => Subject Terms [Group] => Su [Data] => <searchLink fieldCode="DE" term="%22Salmonella%22">Salmonella</searchLink><br /><searchLink fieldCode="DE" term="%22Cefotaxime%22">Cefotaxime</searchLink><br /><searchLink fieldCode="DE" term="%22Epidemiology%22">Epidemiology</searchLink><br /><searchLink fieldCode="DE" term="%22ctx-m%22">ctx-m</searchLink><br /><searchLink fieldCode="DE" term="%22medicine%2Edisease%5Fcause%22">medicine.disease_cause</searchLink><br /><searchLink fieldCode="DE" term="%22Polymerase+Chain+Reaction%22">Polymerase Chain Reaction</searchLink><br /><searchLink fieldCode="DE" term="%22Applied+Microbiology+and+Biotechnology%22">Applied Microbiology and Biotechnology</searchLink><br /><searchLink fieldCode="DE" term="%22Plasmid%22">Plasmid</searchLink><br /><searchLink fieldCode="DE" term="%22Cloaca%22">Cloaca</searchLink><br /><searchLink fieldCode="DE" term="%22Environmental+Microbiology%22">Environmental Microbiology</searchLink><br /><searchLink fieldCode="DE" term="%22polycyclic+compounds%22">polycyclic compounds</searchLink><br /><searchLink fieldCode="DE" term="%22Escherichia+coli+Infections%22">Escherichia coli Infections</searchLink><br /><searchLink fieldCode="DE" term="%22environments%22">environments</searchLink><br /><searchLink fieldCode="DE" term="%22Netherlands%22">Netherlands</searchLink><br /><searchLink fieldCode="DE" term="%22spectrum-beta-lactamase%22">spectrum-beta-lactamase</searchLink><br /><searchLink fieldCode="DE" term="%22Ecology%22">Ecology</searchLink><br /><searchLink fieldCode="DE" term="%22biology%22">biology</searchLink><br /><searchLink fieldCode="DE" term="%22Broth+microdilution%22">Broth microdilution</searchLink><br /><searchLink fieldCode="DE" term="%22Bacteriologie%22">Bacteriologie</searchLink><br /><searchLink fieldCode="DE" term="%22Bacteriology%2C+Host+Pathogen+Interaction+%26+Diagnostics%22">Bacteriology, Host Pathogen Interaction & Diagnostics</searchLink><br /><searchLink fieldCode="DE" term="%22Enterobacteriaceae%22">Enterobacteriaceae</searchLink><br /><searchLink fieldCode="DE" term="%22Anti-Bacterial+Agents%22">Anti-Bacterial Agents</searchLink><br /><searchLink fieldCode="DE" term="%22Electrophoresis%2C+Gel%2C+Pulsed-Field%22">Electrophoresis, Gel, Pulsed-Field</searchLink><br /><searchLink fieldCode="DE" term="%22antibiotic-resistance%22">antibiotic-resistance</searchLink><br /><searchLink fieldCode="DE" term="%22Biotechnology%22">Biotechnology</searchLink><br /><searchLink fieldCode="DE" term="%22medicine%2Edrug%22">medicine.drug</searchLink><br /><searchLink fieldCode="DE" term="%22plasmids%22">plasmids</searchLink><br /><searchLink fieldCode="DE" term="%22Bioinformatica+%26+Diermodellen%22">Bioinformatica & Diermodellen</searchLink><br /><searchLink fieldCode="DE" term="%22salmonella%22">salmonella</searchLink><br /><searchLink fieldCode="DE" term="%22Microbial+Sensitivity+Tests%22">Microbial Sensitivity Tests</searchLink><br /><searchLink fieldCode="DE" term="%22gulls%22">gulls</searchLink><br /><searchLink fieldCode="DE" term="%22beta-Lactam+Resistance%22">beta-Lactam Resistance</searchLink><br /><searchLink fieldCode="DE" term="%22Microbiology%22">Microbiology</searchLink><br /><searchLink fieldCode="DE" term="%22Birds%22">Birds</searchLink><br /><searchLink fieldCode="DE" term="%22Bio-informatics+%26+Animal+models%22">Bio-informatics & Animal models</searchLink><br /><searchLink fieldCode="DE" term="%22Escherichia+coli%22">Escherichia coli</searchLink><br /><searchLink fieldCode="DE" term="%22medicine%22">medicine</searchLink><br /><searchLink fieldCode="DE" term="%22Pulsed-field+gel+electrophoresis%22">Pulsed-field gel electrophoresis</searchLink><br /><searchLink fieldCode="DE" term="%22Animals%22">Animals</searchLink><br /><searchLink fieldCode="DE" term="%22Epidemiology%2C+Bio-informatics+%26+Animal+models%22">Epidemiology, Bio-informatics & Animal models</searchLink><br /><searchLink fieldCode="DE" term="%22Typing%22">Typing</searchLink><br /><searchLink fieldCode="DE" term="%22Host+Pathogen+Interaction+%26+Diagnostics%22">Host Pathogen Interaction & Diagnostics</searchLink><br /><searchLink fieldCode="DE" term="%22Epidemiologie%22">Epidemiologie</searchLink><br /><searchLink fieldCode="DE" term="%22Bacteriology%22">Bacteriology</searchLink><br /><searchLink fieldCode="DE" term="%22Sequence+Analysis%2C+DNA%22">Sequence Analysis, DNA</searchLink><br /><searchLink fieldCode="DE" term="%22biochemical+phenomena%2C+metabolism%2C+and+nutrition%22">biochemical phenomena, metabolism, and nutrition</searchLink><br /><searchLink fieldCode="DE" term="%22Microarray+Analysis%22">Microarray Analysis</searchLink><br /><searchLink fieldCode="DE" term="%22biology%2Eorganism%5Fclassification%22">biology.organism_classification</searchLink><br /><searchLink fieldCode="DE" term="%22bacterial+infections+and+mycoses%22">bacterial infections and mycoses</searchLink><br /><searchLink fieldCode="DE" term="%22Host+Pathogen+Interactie+%26+Diagnostiek%22">Host Pathogen Interactie & Diagnostiek</searchLink><br /><searchLink fieldCode="DE" term="%22Molecular+Typing%22">Molecular Typing</searchLink><br /><searchLink fieldCode="DE" term="%22extended-spectrum%22">extended-spectrum</searchLink><br /><searchLink fieldCode="DE" term="%22Epidemiologie%2C+Bioinformatica+%26+Diermodellen%22">Epidemiologie, Bioinformatica & Diermodellen</searchLink><br /><searchLink fieldCode="DE" term="%22Bacteriologie%2C+Host+Pathogen+Interactie+%26+Diagnostiek%22">Bacteriologie, Host Pathogen Interactie & Diagnostiek</searchLink><br /><searchLink fieldCode="DE" term="%22bacteria%22">bacteria</searchLink><br /><searchLink fieldCode="DE" term="%22CVI+-+Divisie+Bacteriologie+en+TSE's%22">CVI - Divisie Bacteriologie en TSE's</searchLink><br /><searchLink fieldCode="DE" term="%22natural+reserve%22">natural reserve</searchLink><br /><searchLink fieldCode="DE" term="%22Food+Science%22">Food Science</searchLink><br /><searchLink fieldCode="DE" term="%22enterobacteriaceae%22">enterobacteriaceae</searchLink> )
Array ( [Name] => Abstract [Label] => Description [Group] => Ab [Data] => Cloacal swabs from carcasses of Dutch wild birds obtained in 2010 and 2011 were selectively cultured on media with cefotaxime to screen for the presence of extended-spectrum β-lactamase (ESBL)/AmpC-producing Escherichia coli . Subsequently, all cefotaxime-resistant E. coli isolates were tested by broth microdilution and microarray. The presence of ESBL/AmpC and coexisting plasmid-mediated quinolone resistance (PMQR) genes was confirmed by PCR and sequencing. To determine the size of plasmids and the location of ESBL and PMQR genes, S1 pulsed-field gel electrophoresis (PFGE) was performed on transformants, followed by Southern blot hybridization. The study included 414 cloacal swabs originating from 55 different bird species. Cefotaxime-resistant E. coli isolates were identified in 65 birds (15.7%) from 21 different species. In all, 65 cefotaxime-resistant E. coli ESBL/AmpC genes were detected, mainly comprising variants of bla CTX-M and bla CMY-2 . Furthermore, PMQR genes [ aac(6 ′ )-lb-cr , qnrB1 , and qnrS1 ] coincided in seven cefotaxime-resistant E. coli isolates. Overall, replicon typing of the ESBL/AmpC-carrying plasmids demonstrated the predominant presence of IncI1 ( n = 31) and variants of IncF ( n = 18). Our results indicate a wide dissemination of ESBL and AmpC genes in wild birds from The Netherlands, especially among aquatic-associated species (waterfowl, gulls, and waders). The identified genes and plasmids reflect the genes found predominantly in livestock animals as well as in humans. )
Array ( [Name] => Format [Label] => File Description [Group] => SrcInfo [Data] => application/pdf; application/octet-stream )
Array ( [Name] => Language [Label] => Language [Group] => Lang [Data] => English )
Array ( [Name] => ISSN [Label] => ISSN [Group] => ISSN [Data] => 0099-2240 )
Array ( [Name] => DOI [Label] => DOI [Group] => ID [Data] => 10.1128/aem.01880-13 )
Array ( [Name] => URL [Label] => Access URL [Group] => URL [Data] => <link linkTarget="URL" linkTerm="https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a0e887700a96e534dc9f78ee8bcaedf4" linkWindow="_blank">https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a0e887700a96e534dc9f78ee8bcaedf4</link><br /><link linkTarget="URL" linkTerm="https://doi.org/10.1128/aem.01880-13" linkWindow="_blank">https://doi.org/10.1128/aem.01880-13</link> )
Array ( [Name] => Copyright [Label] => Rights [Group] => Cpyrght [Data] => OPEN )
Array ( [Name] => AN [Label] => Accession Number [Group] => ID [Data] => edsair.doi.dedup.....a0e887700a96e534dc9f78ee8bcaedf4 )
RecordInfo Array ( [BibEntity] => Array ( [Identifiers] => Array ( [0] => Array ( [Type] => doi [Value] => 10.1128/aem.01880-13 ) ) [Languages] => Array ( [0] => Array ( [Text] => English ) ) [PhysicalDescription] => Array ( [Pagination] => Array ( [PageCount] => 6 [StartPage] => 7556 ) ) [Subjects] => Array ( [0] => Array ( [SubjectFull] => Salmonella [Type] => general ) [1] => Array ( [SubjectFull] => Cefotaxime [Type] => general ) [2] => Array ( [SubjectFull] => Epidemiology [Type] => general ) [3] => Array ( [SubjectFull] => ctx-m [Type] => general ) [4] => Array ( [SubjectFull] => medicine.disease_cause [Type] => general ) [5] => Array ( [SubjectFull] => Polymerase Chain Reaction [Type] => general ) [6] => Array ( [SubjectFull] => Applied Microbiology and Biotechnology [Type] => general ) [7] => Array ( [SubjectFull] => Plasmid [Type] => general ) [8] => Array ( [SubjectFull] => Cloaca [Type] => general ) [9] => Array ( [SubjectFull] => Environmental Microbiology [Type] => general ) [10] => Array ( [SubjectFull] => polycyclic compounds [Type] => general ) [11] => Array ( [SubjectFull] => Escherichia coli Infections [Type] => general ) [12] => Array ( [SubjectFull] => environments [Type] => general ) [13] => Array ( [SubjectFull] => Netherlands [Type] => general ) [14] => Array ( [SubjectFull] => spectrum-beta-lactamase [Type] => general ) [15] => Array ( [SubjectFull] => Ecology [Type] => general ) [16] => Array ( [SubjectFull] => biology [Type] => general ) [17] => Array ( [SubjectFull] => Broth microdilution [Type] => general ) [18] => Array ( [SubjectFull] => Bacteriologie [Type] => general ) [19] => Array ( [SubjectFull] => Bacteriology, Host Pathogen Interaction & Diagnostics [Type] => general ) [20] => Array ( [SubjectFull] => Enterobacteriaceae [Type] => general ) [21] => Array ( [SubjectFull] => Anti-Bacterial Agents [Type] => general ) [22] => Array ( [SubjectFull] => Electrophoresis, Gel, Pulsed-Field [Type] => general ) [23] => Array ( [SubjectFull] => antibiotic-resistance [Type] => general ) [24] => Array ( [SubjectFull] => Biotechnology [Type] => general ) [25] => Array ( [SubjectFull] => medicine.drug [Type] => general ) [26] => Array ( [SubjectFull] => plasmids [Type] => general ) [27] => Array ( [SubjectFull] => Bioinformatica & Diermodellen [Type] => general ) [28] => Array ( [SubjectFull] => salmonella [Type] => general ) [29] => Array ( [SubjectFull] => Microbial Sensitivity Tests [Type] => general ) [30] => Array ( [SubjectFull] => gulls [Type] => general ) [31] => Array ( [SubjectFull] => beta-Lactam Resistance [Type] => general ) [32] => Array ( [SubjectFull] => Microbiology [Type] => general ) [33] => Array ( [SubjectFull] => Birds [Type] => general ) [34] => Array ( [SubjectFull] => Bio-informatics & Animal models [Type] => general ) [35] => Array ( [SubjectFull] => Escherichia coli [Type] => general ) [36] => Array ( [SubjectFull] => medicine [Type] => general ) [37] => Array ( [SubjectFull] => Pulsed-field gel electrophoresis [Type] => general ) [38] => Array ( [SubjectFull] => Animals [Type] => general ) [39] => Array ( [SubjectFull] => Epidemiology, Bio-informatics & Animal models [Type] => general ) [40] => Array ( [SubjectFull] => Typing [Type] => general ) [41] => Array ( [SubjectFull] => Host Pathogen Interaction & Diagnostics [Type] => general ) [42] => Array ( [SubjectFull] => Epidemiologie [Type] => general ) [43] => Array ( [SubjectFull] => Bacteriology [Type] => general ) [44] => Array ( [SubjectFull] => Sequence Analysis, DNA [Type] => general ) [45] => Array ( [SubjectFull] => biochemical phenomena, metabolism, and nutrition [Type] => general ) [46] => Array ( [SubjectFull] => Microarray Analysis [Type] => general ) [47] => Array ( [SubjectFull] => biology.organism_classification [Type] => general ) [48] => Array ( [SubjectFull] => bacterial infections and mycoses [Type] => general ) [49] => Array ( [SubjectFull] => Host Pathogen Interactie & Diagnostiek [Type] => general ) [50] => Array ( [SubjectFull] => Molecular Typing [Type] => general ) [51] => Array ( [SubjectFull] => extended-spectrum [Type] => general ) [52] => Array ( [SubjectFull] => Epidemiologie, Bioinformatica & Diermodellen [Type] => general ) [53] => Array ( [SubjectFull] => Bacteriologie, Host Pathogen Interactie & Diagnostiek [Type] => general ) [54] => Array ( [SubjectFull] => bacteria [Type] => general ) [55] => Array ( [SubjectFull] => CVI - Divisie Bacteriologie en TSE's [Type] => general ) [56] => Array ( [SubjectFull] => natural reserve [Type] => general ) [57] => Array ( [SubjectFull] => Food Science [Type] => general ) [58] => Array ( [SubjectFull] => enterobacteriaceae [Type] => general ) ) [Titles] => Array ( [0] => Array ( [TitleFull] => Characteristics of Cefotaxime-Resistant Escherichia coli from Wild Birds in The Netherlands [Type] => main ) ) ) [BibRelationships] => Array ( [HasContributorRelationships] => Array ( [0] => Array ( [PersonEntity] => Array ( [Name] => Array ( [NameFull] => Peter van Tulden ) ) ) [1] => Array ( [PersonEntity] => Array ( [Name] => Array ( [NameFull] => Dik Mevius ) ) ) [2] => Array ( [PersonEntity] => Array ( [Name] => Array ( [NameFull] => Kees Veldman ) ) ) [3] => Array ( [PersonEntity] => Array ( [Name] => Array ( [NameFull] => Joop Testerink ) ) ) [4] => Array ( [PersonEntity] => Array ( [Name] => Array ( [NameFull] => Arie Kant ) ) ) ) [IsPartOfRelationships] => Array ( [0] => Array ( [BibEntity] => Array ( [Dates] => Array ( [0] => Array ( [D] => 01 [M] => 01 [Type] => published [Y] => 2013 ) ) [Identifiers] => Array ( [0] => Array ( [Type] => issn-print [Value] => 00992240 ) [1] => Array ( [Type] => issn-locals [Value] => edsair ) [2] => Array ( [Type] => issn-locals [Value] => edsairFT ) ) [Numbering] => Array ( [0] => Array ( [Type] => volume [Value] => 79 ) [1] => Array ( [Type] => issue [Value] => 24 ) ) [Titles] => Array ( [0] => Array ( [TitleFull] => Applied and Environmental Microbiology [Type] => main ) ) ) ) ) ) )
IllustrationInfo