Genome sequence of the pink to light reddish-pigmented Rubellimicrobium mesophilum type strain (DSM 19309T), a representative of the Roseobacter group isolated from soil, and emended description of the species
| العنوان: | Genome sequence of the pink to light reddish-pigmented Rubellimicrobium mesophilum type strain (DSM 19309T), a representative of the Roseobacter group isolated from soil, and emended description of the species |
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| المؤلفون: | Markus Göker, Stefan Spring, Hans-Peter Klenk, Thomas Riedel, Jörn Petersen, Anne Fiebig |
| المساهمون: | Laboratoire de Biodiversité et Biotechnologies Microbiennes (LBBM), Centre National de la Recherche Scientifique (CNRS)-EDF (EDF)-PIERRE FABRE-Université Pierre et Marie Curie - Paris 6 (UPMC)-Observatoire océanologique de Banyuls (OOB), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Leibniz-Institut Deutsche Sammlung von Mikroorganismen und Zelllkulturen GmBH - DSMZ (GERMANY), Observatoire océanologique de Banyuls (OOB), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-PIERRE FABRE-EDF (EDF)-Centre National de la Recherche Scientifique (CNRS) |
| المصدر: | Standards in Genomic Sciences Standards in Genomic Sciences, BioMedCentral, 2014, 9 (3), pp.902-913. ⟨10.4056/sigs.5621012⟩ Standards in Genomic Sciences, 2014, 9 (3), pp.902-913. ⟨10.4056/sigs.5621012⟩ |
| بيانات النشر: | Michigan State University, 2014. |
| سنة النشر: | 2014 |
| مصطلحات موضوعية: | Genome, Irregular rod-shaped, Species description, Roseobacter group, 03 medical and health sciences, Genetics, Primary nutritional groups, 14. Life underwater, Rhodobacteraceae, Gene, 030304 developmental biology, Alphaproteobacteria, Whole genome sequencing, 0303 health sciences, biology, 030306 microbiology, chemoorganotroph, Roseobacter, biology.organism_classification, Short Genome Reports, aerobic, [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology, motile, stenohaline |
| الوصف: | International audience; Rubellimicrobium mesophilum Dastager et al. 2008 is a mesophilic and light reddish-pigmented representative of the Roseobacter group within the alphaproteobacterial family Rhodobacteraceae. Representatives of the Roseobacter group play an important role in the marine biogeochemical cycles and were found in a broad variety of marine environments associated with algal blooms, different kinds of sediments, and surfaces of invertebrates and vertebrates. Roseobacters were shown to be widely distributed, especially within the total bacterial community found in coastal waters, as well as in mixed water layers of the open ocean. Here we describe the features of R. mesophilum strain MSL-20T together with its genome sequence and annotation generated from a culture of DSM 19309T. The 4,927,676 bp genome sequence consists of one chromosome and probably one extrachromosomal element. It contains 5,082 protein-coding genes and 56 RNA genes. As previously reported, the G+C content is significantly different from the actual genome sequence-based G+C content and as the type strain tests positively for oxidase, the species description is emended accordingly. The genome was sequenced as part of the activities of the Transregional Collaborative Research Centre 51 (TRR51) funded by the German Research Foundation (DFG). |
| اللغة: | English |
| تدمد: | 1944-3277 |
| DOI: | 10.4056/sigs.5621012⟩ |
| URL الوصول: | https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9e3bb4854c8087dd4e81e33a0fb318bd http://europepmc.org/articles/PMC4149006 |
| Rights: | OPEN |
| رقم الانضمام: | edsair.doi.dedup.....9e3bb4854c8087dd4e81e33a0fb318bd |
| قاعدة البيانات: | OpenAIRE |
| تدمد: | 19443277 |
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| DOI: | 10.4056/sigs.5621012⟩ |