Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis
| العنوان: | Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis |
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| المؤلفون: | Francis Martin, Annegret Kohler, Claude Murat, Raffaella Balestrini, Pedro M. Coutinho, Olivier Jaillon, Barbara Montanini, Emmanuelle Morin, Benjamin Noel, Riccardo Percudani, Bettina Porcel, Andrea Rubini, Antonella Amicucci, Joelle Amselem, Véronique Anthouard, Sergio Arcioni, François Artiguenave, Jean-Marc Aury, Paola Ballario, Angelo Bolchi, Andrea Brenna, Annick Brun, Marc Buée, Brandi Cantarel, Gérard Chevalier, Arnaud Couloux, Corinne Da Silva, France Denoeud, Sébastien Duplessis, Stefano Ghignone, Benoît Hilselberger, Mirco Iotti, Benoît Marçais, Antonietta Mello, Michele Miranda, Giovanni Pacioni, Hadi Quesneville, Claudia Riccioni, Roberta Ruotolo, Richard Splivallo, Vilberto Stocchi, Emilie Tisserant, Arturo Roberto Viscomi, Alessandra Zambonelli, Elisa Zampieri, Bernard Henrissat, Marc-Henri Lebrun, Francesco Paolocci, Paola Bonfante, Simone Ottonello, Patrick Wincker |
| المساهمون: | Interactions Arbres-Microorganismes (IAM), Université de Lorraine (UL)-Institut National de la Recherche Agronomique (INRA), Istituto per la Protezione Sostenibile delle Piante (CNR-IPSP), UOS Torino, Architecture et fonction des Macromolécules Biologiques - UMR 6098 (AFMB), Université de Provence - Aix-Marseille 1-Centre National de la Recherche Scientifique (CNRS), Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay, Dipartimento di Biochimica e Biologia Molecolare, Università degli studi di Parma [Parme, Italie], Chimie Et Interdisciplinarité : Synthèse, Analyse, Modélisation (CEISAM), Université de Nantes - Faculté des Sciences et des Techniques, Université de Nantes (UN)-Université de Nantes (UN)-Centre National de la Recherche Scientifique (CNRS), Consiglio Nazionale delle Ricerche [Milano] (CNR), Dipartimento di Scienze Biomolecolari Universita di Urbino (DISB), Università degli Studi di Urbino 'Carlo Bo', Institut National de la Recherche Agronomique (INRA), Génomique métabolique (UMR 8030), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université d'Évry-Val-d'Essonne (UEVE), Dipartimento di Genetica e Biologia Molecolare, Università degli Studi di Roma 'La Sapienza' [Rome], Université Blaise Pascal - Clermont-Ferrand 2 (UBP), Università degli Studi di Bologna, Dipartimento di Biologia Vegetale, Università degli studi di Torino (UNITO), Dipartimento di Biologia di Base ed Applicata, Aquila University, Università degli Studi dell'Aquila [L'Aquila] (UNIVAQ.IT), Unité de Recherche Génomique Info (URGI), CNR IGV, Consiglio Nazionale delle Ricerche (CNR), University of Goettingen, Consiglio Nazionale delle Ricerche [Torino] (CNR), Architecture et fonction des macromolécules biologiques (AFMB), Institut National de la Recherche Agronomique (INRA)-Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS), BIOlogie et GEstion des Risques en agriculture (BIOGER), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, Istituto di Scienze e Tecnologie Molecolari = Institute of Molecular Science and Technologies (ISTM-CNR [Perugia - Milano]), ANR-06-BLAN-0399,FungEffector,A genome-wide survey of secreted proteins as effectors of symbiosis and pathogenicity in plant-associated fungi(2006), European Project: 33958,EVOLTREE, Martin, Francis, Murat-Furminieux, Claude, Martin F., Kohler A., Murat C., Balestrini R., Coutinho P.M., Jaillon O., Montanini B., Morin E., Noel B., Percudani R., Porcel B., Rubini A., Amicucci A., Amselem J., Anthouard V., Arcioni S., Artiguenave F., Aury J.M., Ballario P., Bolchi A., Brenna A., Brun A., Buée M., Cantarel B., Chevalier G., Couloux A., Da Silva C., Denoeud F., Duplessis S., Ghignone S., Hilselberger B., Iotti M., Mello M., Miranda M., Pacioni G., Quesneville H., Riccioni C., Ruotolo R., Splivallo R., Stocchi V., Tisserant E., Viscomi A.R., Zambonelli A., Zampieri E., Henrissat B., Lebrun M.H., Paolocci F., Bonfante P., Ottonello S., Wincker P., Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL), CNR Istituto per la Protezione Sostenibile delle Piante [Torino, Italia] (IPSP), National Research Council of Italy | Consiglio Nazionale delle Ricerche (CNR), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Università degli studi di Parma = University of Parma (UNIPR), Université de Nantes - UFR des Sciences et des Techniques (UN UFR ST), Université de Nantes (UN)-Université de Nantes (UN)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS), Università degli Studi di Roma 'La Sapienza' = Sapienza University [Rome] (UNIROMA), Alma Mater Studiorum Università di Bologna [Bologna] (UNIBO), Università degli studi di Torino = University of Turin (UNITO), Università degli Studi dell'Aquila = University of L'Aquila (UNIVAQ), Georg-August-University = Georg-August-Universität Göttingen, Centre National de la Recherche Scientifique (CNRS)-Université de Provence - Aix-Marseille 1, University of Parma = Università degli studi di Parma [Parme, Italie], Université de Nantes (UN)-Université de Nantes (UN)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS)-Université d'Évry-Val-d'Essonne (UEVE), Università degli Studi di Roma 'La Sapienza' = Sapienza University [Rome], Università degli Studi dell'Aquila (UNIVAQ), University of Göttingen - Georg-August-Universität Göttingen, Centre National de la Recherche Scientifique (CNRS)-Aix Marseille Université (AMU)-Institut National de la Recherche Agronomique (INRA), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS), AgroParisTech-Institut National de la Recherche Agronomique (INRA) |
| المصدر: | Nature Nature, Nature Publishing Group, 2010, 464 (7291), pp.1033-1038. ⟨10.1038/nature08867⟩ Nature (464), 1033-1038. (2010) Nature, 2010, 464 (7291), pp.1033-1038. ⟨10.1038/nature08867⟩ Nature (Lond.) 464 (2010): 1033–1038. doi:10.1038/nature08867 info:cnr-pdr/source/autori:Francis M.,A. Kohler,C. Murat, R Balestrini, PM. Coutinho, O. Jaillon, B. Montanini, E. Morin, Noel, R. Percudani, B. Porcel, A. Rubini, A. Amicucci, J. Amselem, V. Anthouard, S. Arcioni, F. Artiguenave, JM. Aury, P. Ballario, A Bolchi, et al./titolo:Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis./doi:10.1038%2Fnature08867/rivista:Nature (Lond.)/anno:2010/pagina_da:1033/pagina_a:1038/intervallo_pagine:1033–1038/volume:464 |
| بيانات النشر: | HAL CCSD, 2010. |
| سنة النشر: | 2010 |
| مصطلحات موضوعية: | 0106 biological sciences, Tuber melanosporum, tuber, ectomycorrhizal fungi, TRUFFE NOIRE DU PERIGORD, [SDV]Life Sciences [q-bio], Genes, Fungal, Molecular Sequence Data, TRUFFE BLANCHE DU PIEMONT, Carbohydrates, Genomics, Haploidy, 01 natural sciences, Genome, Ectosymbiosis, Evolution, Molecular, 03 medical and health sciences, truffe, Symbiosis, Ascomycota, Tuber aestivum, champignon comestible, Fruiting Bodies, Fungal, 030304 developmental biology, 2. Zero hunger, Genetics, 0303 health sciences, Multidisciplinary, Truffle, biology, génome, Fungal genetics, Sequence Analysis, DNA, biology.organism_classification, DNA Transposable Elements, fungal genoma, Genome, Fungal, europe, symbiose, Sulfur, 010606 plant biology & botany |
| الوصف: | Letter; International audience; The Périgord black truffle ($Tuber\ melanosporum$ Vittad.) and the Piedmont white truffle dominate today's truffle market. The hypogeous fruiting body of $T.\ melanosporum$ is a gastronomic delicacy produced by an ectomycorrhizal symbiont endemic to calcareous soils in southern Europe. The worldwide demand for this truffle has fuelled intense efforts at cultivation. Identification of processes that condition and trigger fruit body and symbiosis formation, ultimately leading to efficient crop production, will be facilitated by a thorough analysis of truffle genomic traits. In the ectomycorrhizal $Laccaria\ bicolor$, the expansion of gene families may have acted as a 'symbiosis toolbox'. This feature may however reflect evolution of this particular taxon and not a general trait shared by all ectomycorrhizal species. To get a better understanding of the biology and evolution of the ectomycorrhizal symbiosis, we report here the sequence of the haploid genome of $T.\ melanosporum$, which at $\sim$125 megabases is the largest and most complex fungal genome sequenced so far. This expansion results from a proliferation of transposable elements accounting for $\sim$58% of the genome. In contrast, this genome only contains $\sim$7,500 protein-coding genes with very rare multigene families. It lacks large sets of carbohydrate cleaving enzymes, but a few of them involved in degradation of plant cell walls are induced in symbiotic tissues. The latter feature and the upregulation of genes encoding for lipases and multicopper oxidases suggest that $T.\ melanosporum$ degrades its host cell walls during colonization. Symbiosis induces an increased expression of carbohydrate and amino acid transporters in both $L.\ bicolor$ and $T.\ melanosporum$, but the comparison of genomic traits in the two ectomycorrhizal fungi showed that genetic predispositions for symbiosis $-$'the symbiosis toolbox'$-$ evolved along different ways in ascomycetes and basidiomycetes |
| وصف الملف: | application/pdf; STAMPA |
| اللغة: | English |
| تدمد: | 0028-0836 1476-4679 1476-4687 |
| DOI: | 10.1038/nature08867⟩ |
| DOI: | 10.1038/nature08867 |
| URL الوصول: | https://explore.openaire.eu/search/publication?articleId=doi_dedup___::878bc5b8d0d247f1424bf3d6fd04c075 https://hal-cea.archives-ouvertes.fr/cea-00907731/file/mar.pdf |
| Rights: | OPEN |
| رقم الانضمام: | edsair.doi.dedup.....878bc5b8d0d247f1424bf3d6fd04c075 |
| قاعدة البيانات: | OpenAIRE |
| تدمد: | 00280836 14764679 14764687 |
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| DOI: | 10.1038/nature08867⟩ |