Interpopulation differences of retroduplication variations (RDVs) in rice retrogenes and their phenotypic correlations
| العنوان: | Interpopulation differences of retroduplication variations (RDVs) in rice retrogenes and their phenotypic correlations |
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| المؤلفون: | Jun Zhang, Hongbo Li, Xingyu Chen, Haiyue Zeng, Zhaoyuan Wei, Yi Wang |
| المصدر: | Computational and Structural Biotechnology Journal Computational and Structural Biotechnology Journal, Vol 19, Iss, Pp 600-611 (2021) |
| بيانات النشر: | Research Network of Computational and Structural Biotechnology, 2021. |
| سنة النشر: | 2021 |
| مصطلحات موضوعية: | RDV, Retroduplication variation, Population, Biophysics, MF, Molecular function, Biology, Biochemistry, Genome, 03 medical and health sciences, Retrocopy, 0302 clinical medicine, Structural Biology, CC, Cellular component, Genetics, Domestication, education, GO, Gene ontology, BP, Biological process, Gene, Retroposition, 030304 developmental biology, ComputingMethodologies_COMPUTERGRAPHICS, RDV, Molecular breeding, 0303 health sciences, education.field_of_study, FPKM, Fragments per kilobase per million mapped reads, food and beverages, Phenotypic trait, Phenotype, MST, monosaccharide transporter, Computer Science Applications, 030220 oncology & carcinogenesis, Retrogene, ORF, Open reading frame, Indel, Insertion-deletion, Rice, TP248.13-248.65, Function (biology), Biotechnology, Research Article |
| الوصف: | Graphical abstract Retroduplication variation (RDV), a type of retrocopy polymorphism, is considered to have essential biological significance, but its effect on gene function and species phenotype is still poorly understood. To this end, we analyzed the retrocopies and RDVs in 3,010 rice genomes. We calculated the RDV frequencies in the genome of each rice population; detected the mutated, ancestral and expressed retrogenes in rice genomes; and analyzed their RDV influence on rice phenotypic traits. Collectively, 73 RDVs were identified, and 14 RDVs in ancestral retrogenes can significantly affect rice phenotypes. Our research reveals that RDV plays an important role in rice migration, domestication and evolution. We think that RDV is a good molecular breeding marker candidate. To our knowledge, this is the first study on the relationship between retrogene function, expression, RDV and species phenotype. |
| اللغة: | English |
| تدمد: | 2001-0370 |
| URL الوصول: | https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6b585f54bb8800a9e354b734ad21d6ff http://europepmc.org/articles/PMC7811064 |
| Rights: | OPEN |
| رقم الانضمام: | edsair.doi.dedup.....6b585f54bb8800a9e354b734ad21d6ff |
| قاعدة البيانات: | OpenAIRE |
| تدمد: | 20010370 |
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