Activation Barrier-Limited Folding and Conformational Sampling of a Dynamic Protein Domain

التفاصيل البيبلوغرافية
العنوان: Activation Barrier-Limited Folding and Conformational Sampling of a Dynamic Protein Domain
المؤلفون: Jakob Dogan, Stefano Gianni, Eva Andersson, Angelo Toto, Per Jemth
المصدر: Biochemistry. 55(37)
سنة النشر: 2016
مصطلحات موضوعية: 0301 basic medicine, folding, Protein Folding, Globular protein, Protein domain, Kinetics, globular protein domains, nuclear coactivator-binding domain, Phi value analysis, 010402 general chemistry, Intrinsically disordered proteins, 01 natural sciences, Biochemistry, 03 medical and health sciences, chemistry.chemical_classification, Circular Dichroism, Contact order, Ligand (biochemistry), CREB-Binding Protein, 0104 chemical sciences, Folding (chemistry), Crystallography, 030104 developmental biology, chemistry, Biophysics, Spectrophotometry, Ultraviolet
الوصف: Folding reaction mechanisms of globular protein domains have been extensively studied by both experiment and simulation and found to be highly concerted chemical reactions in which numerous noncovalent bonds form in an apparent two-state fashion. However, less is known regarding intrinsically disordered proteins because their folding can usually be studied only in conjunction with binding to a ligand. We have investigated by kinetics the folding mechanism of such a disordered protein domain, the nuclear coactivator-binding domain (NCBD) from CREB-binding protein. While a previous computational study suggested that NCBD folds without an activation free energy barrier, our experimental data demonstrate that NCBD, despite its highly dynamic structure, displays relatively slow folding (∼10 ms at 277 K) consistent with a barrier-limited process. Furthermore, the folding kinetics corroborate previous nuclear magnetic resonance data showing that NCBD exists in two folded conformations and one more denatured conformation at equilibrium and, thus, that the folding mechanism is a three-state mechanism. The refolding kinetics is limited by unfolding of the less populated folded conformation, suggesting that the major route for interconversion between the two folded states is via the denatured state. Because the two folded conformations have been suggested to bind distinct ligands, our results have mechanistic implications for conformational sampling in protein-protein interactions.
تدمد: 1520-4995
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::62b7ee433fc63de5690971002136df7c
https://pubmed.ncbi.nlm.nih.gov/27542287
Rights: CLOSED
رقم الانضمام: edsair.doi.dedup.....62b7ee433fc63de5690971002136df7c
قاعدة البيانات: OpenAIRE