FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles
| العنوان: | FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles |
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| المؤلفون: | Kaire Loit, Jenni Nordén, Samantha C. Karunarathna, Peter R. Johnston, Kalev Adamson, Sajeewa S. N. Maharachchikumbura, Shawn P. Brown, Renato Lucio Mendes-Alvarenga, Kati Küngas, Kristjan Adojaan, Yuri Tokarev, Yong-Zhong Lu, Håvard Kauserud, Karina E. Clemmensen, Rasekh Amiri, Annemieke Verbeken, Vladimir S. Mikryukov, Karl-Henrik Larsson, Merje Toome-Heller, Zhu Hua Luo, Kadri Runnel, Rein Drenkhan, Tanel Vahter, Keilor Rojas-Jimenez, Martti Vasar, Hugo Madrid, Vitor Xavier de Lima, Ruvishika S. Jayawardena, R. Henrik Nilsson, Leho Tedersoo, Krišs Bitenieks, Rasmus Kjøller, Thorsten Lumbsch, María Isabel Mujica, Torda Varga, Yumiko Miyamoto, Tatiana Baptista Gibertoni, Milan C. Samarakoon, Ina Timling, A. R. Machado, Tanay Bose, Michelle Cleary, Robin Gielen, Inga Hiiesalu, Victor R. M. Coimbra, Dhanushka N. Wanasinghe, William J. Davis, Thomas Læssøe, Adriana Corrales, Bao-Kai Cui, Lysett Wagner, Petr Baldrian, César Marín, Wei Li, Hans-Peter Grossart, Björn D. Lindahl, Laszlo Nagy, Angelina de Meiras-Ottoni, Jian-Kui Liu, Andrés Argüelles-Moyao, Qing Tian, Martin Metsoja, Kessy Abarenkov, Siim-Kaarel Sepp, Yosuke Matsuda, M. Catherine Aime, Marcelo Sandoval-Denis, Nicole K. Reynolds, Jane Oja, Olesya Dulya, Tom W. May, Niloufar Hagh-Doust, Tobias Guldberg Frøslev, Mohammad Bahram, C. K. Pradeep, Qian Chen, Urmas Kõljalg, Kevin D. Hyde, Kazuhide Nara, Tarquin Netherway, Saowaluck Tibpromma, Farzad Aslani, Nhu H. Nguyen, Renata dos Santos Chikowski, Saleh Rahimlou, Sunil Mundra, Daniyal Gohar, Kadri Põldmaa, Laszlo Irinyi, Donald H. Pfister, Hossein Masigol, Petr Kohout, Kadri Pärtel, Matthew E. Smith, Li-Wei Zhou, Teng Yang, Liina Soonvald, Matthew P. Nelsen, Helle Järv, Alfredo Vizzini, John Y. Kupagme, Masao Murata, Sergei Põlme, Arun Kumar Dutta, Virton Rodrigo Targino de Oliveira, Martin Ryberg, Eveli Otsing, Nelson Menolli, Andrew P. Detheridge, Mingkwan Doilom, Ahto Agan, Rungtiwa Phookamsak, Rekhani H. Perera, Rajasree Nandi, Gareth W. Griffith, Scott T. Bates, Nalin N. Wijayawardene, Julia Pawłowska, Hans Otto Baral, Julieta Alvarez-Manjarrez, József Geml, Maarja Öpik, Kai Ilves, Karen Hansen, Roberto Garibay-Orijel, Daniel E. Stanton, Adriene Mayra Soares, Ave Suija |
| المساهمون: | Westerdijk Fungal Biodiversity Institute, Westerdijk Fungal Biodiversity Institute - Evolutionary Phytopathology |
| المصدر: | Fungal Diversity 105 Kérwá Universidad de Costa Rica instacron:UCR Fungal diversity Põlme, S, Abarenkov, K, Nilsson, R H, Lindahl, B D, Clemmensen, K E, Kauserud, H, Nguyen, N, Kjøller, R, Bates, S T, Baldrian, P, Frøslev, T G, Adojaan, K, Vizzini, A, Suija, A, Pfister, D, Baral, H O, Järv, H, Madrid, H, Nordén, J, Liu, J-K, Pawlowska, J, Põldmaa, K, Pärtel, K, Runnel, K, Hansen, K, Larsson, K-H, Hyde, K D, Sandoval-Denis, M, Smith, M E, Toome-Heller, M, Wijayawardene, N N, Menolli, N, Reynolds, N K, Drenkhan, R, Maharachchikumbura, S S N, Gibertoni, T B, Læssøe, T, Davis, W, Tokarev, Y, Corrales, A, Soares, A M, Agan, A, Machado, A R, Argüelles-Moyao, A, Detheridge, A, de Meiras-Ottoni, A, Verbeken, A, Dutta, A K, Cui, B-K, Pradeep, C K, Marín, C, Stanton, D, Gohar, D, Wanasinghe, D N, Otsing, E, Aslani, F, Griffith, G W, Lumbsch, T H, Grossart, H-P, Masigol, H, Timling, I, Hiiesalu, I, Oja, J, Kupagme, J Y, Geml, J, Alvarez-Manjarrez, J, Ilves, K, Loit, K, Adamson, K, Nara, K, Küngas, K, Rojas-Jimenez, K, Bitenieks, K, Irinyi, L, Nagy, L G, Soonvald, L, Zhou, L-W, Wagner, L, Aime, M C, Öpik, M, Mujica, M I, Metsoja, M, Ryberg, M, Vasar, M, Murata, M, Nelsen, M P, Cleary, M, Samarakoon, M C, Doilom, M, Bahram, M, Hagh-Doust, N, Dulya, O, Johnston, P, Kohout, P, Chen, Q, Tian, Q, Nandi, R, Amiri, R, Perera, R H, Chikowski, R D S, Mendes-Alvarenga, R L, Garibay-Orijel, R, Gielen, R, Phookamsak, R, Jayawardena, R S, Rahimlou, S, Karunarathna, S C, Tibpromma, S, Brown, S P, Sepp, S-K, Mundra, S, Luo, Z-H, Bose, T, Vahter, T, Netherway, T, Yang, T, May, T, Varga, T, Li, W, Coimbra, V R M, de Oliveira, V R T, de Lima, V X, Mikryukov, V S, Lu, Y, Matsuda, Y, Miyamoto, Y, Kõljalg, U & Tedersoo, L 2020, ' FungalTraits : a user-friendly traits database of fungi and fungus-like stramenopiles ', Fungal Diversity, vol. 105, no. 1, pp. 1-16 . https://doi.org/10.1007/s13225-020-00466-2 Fungal Diversity, 105(1). Springer Netherlands |
| سنة النشر: | 2021 |
| مصطلحات موضوعية: | User Friendly, High-throughput sequencing, Ecology, Community, Database, Bioinformatics, Zoology and botany: 480 [VDP], Biodiversity, Fungal traits, Guild, Trophic modes, Biology, computer.software_genre, Environmental studies, Taxon, Habitat, Trait, Community ecology, Function, Zoologiske og botaniske fag: 480 [VDP], computer, Ecology, Evolution, Behavior and Systematics |
| الوصف: | The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies. Over the past decades, rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and habitats. Yet, in spite of the progress of molecular methods, knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains challenging. In order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis levels. Combining the information from previous efforts such as FUNGuild and FunFun together with involvement of expert knowledge, we reannotated 10,210 and 151 fungal and Stramenopila genera, respectively. This resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera, designed for rapid functional assignments of environmental studies. In order to assign the trait states to fungal species hypotheses, the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS sequences. On the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1% dissimilarity threshold. Fungal traits · Trophic modes · Function · Guild · Bioinformatics · High-throughput sequencing · Community ecology |
| وصف الملف: | application/pdf |
| اللغة: | English |
| تدمد: | 1560-2745 |
| DOI: | 10.1007/s13225-020-00466-2 |
| URL الوصول: | https://explore.openaire.eu/search/publication?articleId=doi_dedup___::45c382402eb4ae82c9c32fbc2faa1fd1 https://link.springer.com/article/10.1007/s13225-020-00466-2 |
| Rights: | OPEN |
| رقم الانضمام: | edsair.doi.dedup.....45c382402eb4ae82c9c32fbc2faa1fd1 |
| قاعدة البيانات: | OpenAIRE |
| تدمد: | 15602745 |
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| DOI: | 10.1007/s13225-020-00466-2 |