Towards recommendations for metadata and data handling in plant phenotyping
| العنوان: | Towards recommendations for metadata and data handling in plant phenotyping |
|---|---|
| المؤلفون: | Cyril Pommier, Stephan Weise, Christian Klukas, Paul J. Kersey, Marco van Schriek, Jan van Oeveren, Björn Usadel, Hanna Ćwiek, Aalt D. J. van Dijk, Paweł Krajewski, Augustyn Markiewicz, Jan-Peter Nap, Dijun Chen, Matthias Lange, Uwe Scholz, Fabio Fiorani |
| المساهمون: | Institute of Plant Genetics, Polska Akademia Nauk = Polish Academy of Sciences (PAN), Leibniz Institute of Plant Genetics and Crop Plant Research, Wageningen University and Research Centre (WUR), Forschungszentrum Jülich GmbH | Centre de recherche de Juliers, Helmholtz-Gemeinschaft = Helmholtz Association, European Molecular Biology Laboratory (EMBL), Poznan University of Life Sciences, KeyGene [Wageningen], Unité de Recherche Génomique Info (URGI), Institut National de la Recherche Agronomique (INRA), RWTH Aachen University, European Union FP7 EPPN (European Plant Phenotyping Network) Project [284443], European Union FP7 DROPS (Drought-Tolerant Yielding Plants) Project [244374], Budget for science 2011-2015, international co-financed project [2157/7. PR UE/2011/2], European Project: 283496,EC:FP7:INFRA,FP7-INFRASTRUCTURES-2011-2,TRANSPLANT(2011), Rheinisch-Westfälische Technische Hochschule Aachen University (RWTH) |
| المصدر: | Europe PubMed Central Journal of Experimental Botany Journal of Experimental Botany, Oxford University Press (OUP), 2015, 66 (18), pp.5417-5427. ⟨10.1093/jxb/erv271⟩ The journal of experimental botany 66(18), 5417-5427 (2015). doi:10.1093/jxb/erv271 Journal of Experimental Botany, 2015, 66 (18), pp.5417-5427. ⟨10.1093/jxb/erv271⟩ Journal of Experimental Botany 66 (2015) 18 Journal of Experimental Botany, 66(18), 5417-5427 |
| مصطلحات موضوعية: | 0106 biological sciences, Crops, Agricultural, phenotyping, Standardization, Physiology, Group method of data handling, [SDV]Life Sciences [q-bio], Interoperability, Statistics as Topic, Plant Science, Biology, Bioinformatics, 01 natural sciences, Wiskundige en Statistische Methoden - Biometris, Field (computer science), 03 medical and health sciences, BIOS Applied Bioinformatics, Phenomics, data interoperability, metadata content, [SDV.BV]Life Sciences [q-bio]/Vegetal Biology, Mathematical and Statistical Methods - Biometris, 030304 developmental biology, 2. Zero hunger, standardization, 0303 health sciences, Expediting, Genomics, Data science, minimum information recommendations, Metadata, Data formatting, ddc:580, Phenotype, Work (electrical), Genome, Plant, 010606 plant biology & botany |
| الوصف: | Corrigendum: The original version of this paper omitted a piece of funding information. In order to properly accredit funders, the authors would like it to be known that the work of the Polish group was co-financed from the budget for science 2011–2015, international co-financed project no. 2157/7. PR UE/2011/2. The online version of the paper has now been updated to reflect this information. https://doi.org/10.1093/jxb/ery006 WOS:000428655800030; International audience; Recent methodological developments in plant phenotyping, as well as the growing importance of its applications in plant science and breeding, are resulting in a fast accumulation of multidimensional data. There is great potential for expediting both discovery and application if these data are made publicly available for analysis. However, collection and storage of phenotypic observations is not yet sufficiently governed by standards that would ensure interoperability among data providers and precisely link specific phenotypes and associated genomic sequence information. This lack of standards is mainly a result of a large variability of phenotyping protocols, the multitude of phenotypic traits that are measured, and the dependence of these traits on the environment. This paper discusses the current situation of standardization in the area of phenomics, points out the problems and shortages, and presents the areas that would benefit from improvement in this field. In addition, the foundations of the work that could revise the situation are proposed, and practical solutions developed by the authors are introduced. |
| وصف الملف: | application/pdf; application/octet-stream |
| تدمد: | 0022-0957 1460-2431 |
| DOI: | 10.1093/jxb/erv271⟩ |
| DOI: | 10.1093/jxb/erv271 |
| URL الوصول: | https://explore.openaire.eu/search/publication?articleId=doi_dedup___::37867580fc10207cde35632e74d93808 http://europepmc.org/abstract/med/26044092 |
| Rights: | OPEN |
| رقم الانضمام: | edsair.doi.dedup.....37867580fc10207cde35632e74d93808 |
| قاعدة البيانات: | OpenAIRE |
| تدمد: | 00220957 14602431 |
|---|---|
| DOI: | 10.1093/jxb/erv271⟩ |