The mineralogy of three back-barrier peat marshes (Torreblanca, Benicasim and Moncofar marshes) from Eastern Spain and one peat bog (Orihuela del Tremedal bog) from central east Spain have been investigated, using X-ray diffraction (XRD) and scanning electronic microscope (SEM) techniques. A combination of XRD methods was used to quantify the mineralogy of dried bulk peat samples. The water source in the peat marshes is both continental and marine. Water is highly mineralised. Water flow is both low and slow (accumulative system). The water source in the peat bog is continental, draining from the hill. The higher concentration of ions in the water of the back-barrier peat marshes leads to a higher concentration of authigenic minerals in the peat marshes compared to the peat bog. Three main mineral origins have been recognized, namely: detrital, syngenetic–epigenetic and biogenic. The more important contribution comes from the detrital system. Biogenic and bio-influenced minerals are the main non-detrital minerals in the peatlands. This paper discusses the biogenic origin of halite (and other minor halides and sulphates, such as, sylvite, carnalite, epsomite, glauberite, mirabilite and anhydrite?) from halophytic plants, as well as amorphous silica (opal-A) from sponge spicules and phytoliths of several plants. Pyrite in the peat bog has both syngenetic and epigenetic origins from plant decomposition and sulphur release. In the peat marsh the pyrite has a syngenetic origin from sulphate reduction (S sulphate → S pyritic ), and an epigenetic origin in the older peat, from plant decomposition (S organic → S pyritic ).