Electronic Resource
Mapache:a flexible pipeline to map ancient DNA
| العنوان: | Mapache:a flexible pipeline to map ancient DNA |
|---|---|
| المؤلفون: | Neuenschwander, Samuel, Cruz Dávalos, Diana I, Anchieri, Lucas, Sousa da Mota, Bárbara, Bozzi, Davide, Rubinacci, Simone, Delaneau, Olivier, Rasmussen, Simon, Malaspinas, Anna-Sapfo |
| المصدر: | Neuenschwander , S , Cruz Dávalos , D I , Anchieri , L , Sousa da Mota , B , Bozzi , D , Rubinacci , S , Delaneau , O , Rasmussen , S & Malaspinas , A-S 2023 , ' Mapache : a flexible pipeline to map ancient DNA ' , Bioinformatics (Online) , vol. 39 , no. 2 . |
| بيانات النشر: | 2023 |
| نوع الوثيقة: | Electronic Resource |
| مستخلص: | SUMMARY: We introduce mapache, a flexible, robust and scalable pipeline to map, quantify and impute ancient and present-day DNA in a reproducible way. Mapache is implemented in the workflow manager Snakemake and is optimized for low-space consumption, allowing to efficiently (re)map large datasets-such as reference panels and multiple extracts and libraries per sample - to one or several genomes. Mapache can easily be customized or combined with other Snakemake tools.AVAILABILITY AND IMPLEMENTATION: Mapache is freely available on GitHub (https://github.com/sneuensc/mapache). An extensive manual is provided at https://github.com/sneuensc/mapache/wiki.SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. |
| مصطلحات الفهرس: | Software, DNA, Ancient, Genome, Workflow, article |
| URL: | |
| الاتاحة: | Open access content. Open access content info:eu-repo/semantics/openAccess |
| ملاحظة: | application/pdf English |
| Other Numbers: | DAV oai:pure.atira.dk:publications/cc050f2f-ebf2-4452-8879-3db07f40c397 1382521035 |
| المصدر المساهم: | UNIV OF COPENHAGEN From OAIster®, provided by the OCLC Cooperative. |
| رقم الانضمام: | edsoai.on1382521035 |
| قاعدة البيانات: | OAIster |
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