Academic Journal
The LOTUS initiative for open knowledge management in natural products research
| العنوان: | The LOTUS initiative for open knowledge management in natural products research |
|---|---|
| المؤلفون: | Adriano Rutz, Maria Sorokina, Jakub Galgonek, Daniel Mietchen, Egon Willighagen, Arnaud Gaudry, James G Graham, Ralf Stephan, Roderic Page, Jiří Vondrášek, Christoph Steinbeck, Guido F Pauli, Jean-Luc Wolfender, Jonathan Bisson, Pierre-Marie Allard |
| المصدر: | eLife, Vol 11 (2022) |
| بيانات النشر: | eLife Sciences Publications Ltd, 2022. |
| سنة النشر: | 2022 |
| المجموعة: | LCC:Medicine LCC:Science LCC:Biology (General) |
| مصطلحات موضوعية: | open science, natural products, Wikidata, knowledge graph, linked data, LOTUS Initiative, Medicine, Science, Biology (General), QH301-705.5 |
| الوصف: | Contemporary bioinformatic and chemoinformatic capabilities hold promise to reshape knowledge management, analysis and interpretation of data in natural products research. Currently, reliance on a disparate set of non-standardized, insular, and specialized databases presents a series of challenges for data access, both within the discipline and for integration and interoperability between related fields. The fundamental elements of exchange are referenced structure-organism pairs that establish relationships between distinct molecular structures and the living organisms from which they were identified. Consolidating and sharing such information via an open platform has strong transformative potential for natural products research and beyond. This is the ultimate goal of the newly established LOTUS initiative, which has now completed the first steps toward the harmonization, curation, validation and open dissemination of 750,000+ referenced structure-organism pairs. LOTUS data is hosted on Wikidata and regularly mirrored on https://lotus.naturalproducts.net. Data sharing within the Wikidata framework broadens data access and interoperability, opening new possibilities for community curation and evolving publication models. Furthermore, embedding LOTUS data into the vast Wikidata knowledge graph will facilitate new biological and chemical insights. The LOTUS initiative represents an important advancement in the design and deployment of a comprehensive and collaborative natural products knowledge base. |
| نوع الوثيقة: | article |
| وصف الملف: | electronic resource |
| اللغة: | English |
| تدمد: | 2050-084X |
| Relation: | https://elifesciences.org/articles/70780; https://doaj.org/toc/2050-084X |
| DOI: | 10.7554/eLife.70780 |
| URL الوصول: | https://doaj.org/article/55a51ec0a5b9470e90e913bfceaefe5d |
| رقم الانضمام: | edsdoj.55a51ec0a5b9470e90e913bfceaefe5d |
| قاعدة البيانات: | Directory of Open Access Journals |
Full Text Finder | ResultId |
1 |
|---|---|
| Header |
edsdoj Directory of Open Access Journals edsdoj.55a51ec0a5b9470e90e913bfceaefe5d 942 3 Academic Journal academicJournal 942.376770019531 |
| PLink |
https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&scope=site&db=edsdoj&AN=edsdoj.55a51ec0a5b9470e90e913bfceaefe5d&custid=s6537998&authtype=sso |
| FullText |
Array
(
[Availability] => 0
)
Array ( [0] => Array ( [Url] => https://doaj.org/article/55a51ec0a5b9470e90e913bfceaefe5d [Name] => EDS - DOAJ [Category] => fullText [Text] => View record in DOAJ [MouseOverText] => View record in DOAJ ) [1] => Array ( [Url] => https://resolver.ebscohost.com/openurl?custid=s6537998&groupid=main&authtype=ip,guest&sid=EBSCO:edsdoj&genre=article&issn=2050084X&ISBN=&volume=11&issue=&date=20220501&spage=&pages=&title=eLife&atitle=The%20LOTUS%20initiative%20for%20open%20knowledge%20management%20in%20natural%20products%20research&id=DOI:10.7554/eLife.70780 [Name] => Full Text Finder (s6537998api) [Category] => fullText [Text] => Full Text Finder [Icon] => https://imageserver.ebscohost.com/branding/images/FTF.gif [MouseOverText] => Full Text Finder ) ) |
| Items |
Array
(
[Name] => Title
[Label] => Title
[Group] => Ti
[Data] => The LOTUS initiative for open knowledge management in natural products research
)
Array ( [Name] => Author [Label] => Authors [Group] => Au [Data] => <searchLink fieldCode="AR" term="%22Adriano+Rutz%22">Adriano Rutz</searchLink><br /><searchLink fieldCode="AR" term="%22Maria+Sorokina%22">Maria Sorokina</searchLink><br /><searchLink fieldCode="AR" term="%22Jakub+Galgonek%22">Jakub Galgonek</searchLink><br /><searchLink fieldCode="AR" term="%22Daniel+Mietchen%22">Daniel Mietchen</searchLink><br /><searchLink fieldCode="AR" term="%22Egon+Willighagen%22">Egon Willighagen</searchLink><br /><searchLink fieldCode="AR" term="%22Arnaud+Gaudry%22">Arnaud Gaudry</searchLink><br /><searchLink fieldCode="AR" term="%22James+G+Graham%22">James G Graham</searchLink><br /><searchLink fieldCode="AR" term="%22Ralf+Stephan%22">Ralf Stephan</searchLink><br /><searchLink fieldCode="AR" term="%22Roderic+Page%22">Roderic Page</searchLink><br /><searchLink fieldCode="AR" term="%22Jiří+Vondrášek%22">Jiří Vondrášek</searchLink><br /><searchLink fieldCode="AR" term="%22Christoph+Steinbeck%22">Christoph Steinbeck</searchLink><br /><searchLink fieldCode="AR" term="%22Guido+F+Pauli%22">Guido F Pauli</searchLink><br /><searchLink fieldCode="AR" term="%22Jean-Luc+Wolfender%22">Jean-Luc Wolfender</searchLink><br /><searchLink fieldCode="AR" term="%22Jonathan+Bisson%22">Jonathan Bisson</searchLink><br /><searchLink fieldCode="AR" term="%22Pierre-Marie+Allard%22">Pierre-Marie Allard</searchLink> ) Array ( [Name] => TitleSource [Label] => Source [Group] => Src [Data] => eLife, Vol 11 (2022) ) Array ( [Name] => Publisher [Label] => Publisher Information [Group] => PubInfo [Data] => eLife Sciences Publications Ltd, 2022. ) Array ( [Name] => DatePubCY [Label] => Publication Year [Group] => Date [Data] => 2022 ) Array ( [Name] => Subset [Label] => Collection [Group] => HoldingsInfo [Data] => LCC:Medicine<br />LCC:Science<br />LCC:Biology (General) ) Array ( [Name] => Subject [Label] => Subject Terms [Group] => Su [Data] => <searchLink fieldCode="DE" term="%22open+science%22">open science</searchLink><br /><searchLink fieldCode="DE" term="%22natural+products%22">natural products</searchLink><br /><searchLink fieldCode="DE" term="%22Wikidata%22">Wikidata</searchLink><br /><searchLink fieldCode="DE" term="%22knowledge+graph%22">knowledge graph</searchLink><br /><searchLink fieldCode="DE" term="%22linked+data%22">linked data</searchLink><br /><searchLink fieldCode="DE" term="%22LOTUS+Initiative%22">LOTUS Initiative</searchLink><br /><searchLink fieldCode="DE" term="%22Medicine%22">Medicine</searchLink><br /><searchLink fieldCode="DE" term="%22Science%22">Science</searchLink><br /><searchLink fieldCode="DE" term="%22Biology+%28General%29%22">Biology (General)</searchLink><br /><searchLink fieldCode="DE" term="%22QH301-705%2E5%22">QH301-705.5</searchLink> ) Array ( [Name] => Abstract [Label] => Description [Group] => Ab [Data] => Contemporary bioinformatic and chemoinformatic capabilities hold promise to reshape knowledge management, analysis and interpretation of data in natural products research. Currently, reliance on a disparate set of non-standardized, insular, and specialized databases presents a series of challenges for data access, both within the discipline and for integration and interoperability between related fields. The fundamental elements of exchange are referenced structure-organism pairs that establish relationships between distinct molecular structures and the living organisms from which they were identified. Consolidating and sharing such information via an open platform has strong transformative potential for natural products research and beyond. This is the ultimate goal of the newly established LOTUS initiative, which has now completed the first steps toward the harmonization, curation, validation and open dissemination of 750,000+ referenced structure-organism pairs. LOTUS data is hosted on Wikidata and regularly mirrored on https://lotus.naturalproducts.net. Data sharing within the Wikidata framework broadens data access and interoperability, opening new possibilities for community curation and evolving publication models. Furthermore, embedding LOTUS data into the vast Wikidata knowledge graph will facilitate new biological and chemical insights. The LOTUS initiative represents an important advancement in the design and deployment of a comprehensive and collaborative natural products knowledge base. ) Array ( [Name] => TypeDocument [Label] => Document Type [Group] => TypDoc [Data] => article ) Array ( [Name] => Format [Label] => File Description [Group] => SrcInfo [Data] => electronic resource ) Array ( [Name] => Language [Label] => Language [Group] => Lang [Data] => English ) Array ( [Name] => ISSN [Label] => ISSN [Group] => ISSN [Data] => 2050-084X ) Array ( [Name] => NoteTitleSource [Label] => Relation [Group] => SrcInfo [Data] => https://elifesciences.org/articles/70780; https://doaj.org/toc/2050-084X ) Array ( [Name] => DOI [Label] => DOI [Group] => ID [Data] => 10.7554/eLife.70780 ) Array ( [Name] => URL [Label] => Access URL [Group] => URL [Data] => <link linkTarget="URL" linkTerm="https://doaj.org/article/55a51ec0a5b9470e90e913bfceaefe5d" linkWindow="_blank">https://doaj.org/article/55a51ec0a5b9470e90e913bfceaefe5d</link> ) Array ( [Name] => AN [Label] => Accession Number [Group] => ID [Data] => edsdoj.55a51ec0a5b9470e90e913bfceaefe5d ) |
| RecordInfo |
Array
(
[BibEntity] => Array
(
[Identifiers] => Array
(
[0] => Array
(
[Type] => doi
[Value] => 10.7554/eLife.70780
)
)
[Languages] => Array
(
[0] => Array
(
[Text] => English
)
)
[Subjects] => Array
(
[0] => Array
(
[SubjectFull] => open science
[Type] => general
)
[1] => Array
(
[SubjectFull] => natural products
[Type] => general
)
[2] => Array
(
[SubjectFull] => Wikidata
[Type] => general
)
[3] => Array
(
[SubjectFull] => knowledge graph
[Type] => general
)
[4] => Array
(
[SubjectFull] => linked data
[Type] => general
)
[5] => Array
(
[SubjectFull] => LOTUS Initiative
[Type] => general
)
[6] => Array
(
[SubjectFull] => Medicine
[Type] => general
)
[7] => Array
(
[SubjectFull] => Science
[Type] => general
)
[8] => Array
(
[SubjectFull] => Biology (General)
[Type] => general
)
[9] => Array
(
[SubjectFull] => QH301-705.5
[Type] => general
)
)
[Titles] => Array
(
[0] => Array
(
[TitleFull] => The LOTUS initiative for open knowledge management in natural products research
[Type] => main
)
)
)
[BibRelationships] => Array
(
[HasContributorRelationships] => Array
(
[0] => Array
(
[PersonEntity] => Array
(
[Name] => Array
(
[NameFull] => Adriano Rutz
)
)
)
[1] => Array
(
[PersonEntity] => Array
(
[Name] => Array
(
[NameFull] => Maria Sorokina
)
)
)
[2] => Array
(
[PersonEntity] => Array
(
[Name] => Array
(
[NameFull] => Jakub Galgonek
)
)
)
[3] => Array
(
[PersonEntity] => Array
(
[Name] => Array
(
[NameFull] => Daniel Mietchen
)
)
)
[4] => Array
(
[PersonEntity] => Array
(
[Name] => Array
(
[NameFull] => Egon Willighagen
)
)
)
[5] => Array
(
[PersonEntity] => Array
(
[Name] => Array
(
[NameFull] => Arnaud Gaudry
)
)
)
[6] => Array
(
[PersonEntity] => Array
(
[Name] => Array
(
[NameFull] => James G Graham
)
)
)
[7] => Array
(
[PersonEntity] => Array
(
[Name] => Array
(
[NameFull] => Ralf Stephan
)
)
)
[8] => Array
(
[PersonEntity] => Array
(
[Name] => Array
(
[NameFull] => Roderic Page
)
)
)
[9] => Array
(
[PersonEntity] => Array
(
[Name] => Array
(
[NameFull] => Jiří Vondrášek
)
)
)
[10] => Array
(
[PersonEntity] => Array
(
[Name] => Array
(
[NameFull] => Christoph Steinbeck
)
)
)
[11] => Array
(
[PersonEntity] => Array
(
[Name] => Array
(
[NameFull] => Guido F Pauli
)
)
)
[12] => Array
(
[PersonEntity] => Array
(
[Name] => Array
(
[NameFull] => Jean-Luc Wolfender
)
)
)
[13] => Array
(
[PersonEntity] => Array
(
[Name] => Array
(
[NameFull] => Jonathan Bisson
)
)
)
[14] => Array
(
[PersonEntity] => Array
(
[Name] => Array
(
[NameFull] => Pierre-Marie Allard
)
)
)
)
[IsPartOfRelationships] => Array
(
[0] => Array
(
[BibEntity] => Array
(
[Dates] => Array
(
[0] => Array
(
[D] => 01
[M] => 05
[Type] => published
[Y] => 2022
)
)
[Identifiers] => Array
(
[0] => Array
(
[Type] => issn-print
[Value] => 2050084X
)
)
[Numbering] => Array
(
[0] => Array
(
[Type] => volume
[Value] => 11
)
)
[Titles] => Array
(
[0] => Array
(
[TitleFull] => eLife
[Type] => main
)
)
)
)
)
)
)
|
| IllustrationInfo |