Academic Journal
Sample preparation and culture conditions effects on MALDI-TOF MS identification of bacteria: A review
| العنوان: | Sample preparation and culture conditions effects on MALDI-TOF MS identification of bacteria: A review |
|---|---|
| المؤلفون: | Topić Popović, Natalija, Kazazić, Snježana, Bojanić, Krunoslav, Strunjak-Perović, Ivančica, Čož-Rakovac, Rozelindra |
| المصدر: | Mass spectrometry reviews |
| بيانات النشر: | Wiley |
| سنة النشر: | 2023 |
| المجموعة: | Ruđer Bošković Institute Zagreb: Full-text Institutional Repository (FULIR) |
| مصطلحات موضوعية: | Biology, Veterinary Medicine, Biotechnology |
| الوصف: | Matrix-assisted laser desorption/ionization time- of-flight mass spectrometry(MALDI-TOF MS) is an excellent tool for bacterial identification. It allows high throughput, sensitive and specific applications in clinical diagnostics and environ- mental research. Currently, there is no optimal standardized protocol for sample preparation and culture conditions to profile bacteria. The performance of MALDITOF MS is affected by several variables, such as sample preparation, culture media and culture conditions, incubation time/growth stage, incubation temperature, high salt content, blood in the culture media, and others. This review thus aims to clarify why a uniformed protocol is not plausible, to assess the effects these factors have onMALDITOF MS identification score, and discuss possible optimizations for its methodology, in relation to specific bacterial representatives and strain requirements. |
| نوع الوثيقة: | article in journal/newspaper |
| وصف الملف: | application/pdf |
| اللغة: | English |
| Relation: | info:eu-repo/grantAgreement/MZOS/ZP/N/A; http://fulir.irb.hr/8178/; https://doi.org/10.1002/mas.21739; http://fulir.irb.hr/8178/1/Mass%20Spec%20Rev_Maldi.pdf |
| DOI: | 10.1002/mas.21739 |
| الاتاحة: | http://fulir.irb.hr/8178/ http://fulir.irb.hr/8178/1/Mass%20Spec%20Rev_Maldi.pdf https://doi.org/10.1002/mas.21739 |
| Rights: | info:eu-repo/semantics/openAccess |
| رقم الانضمام: | edsbas.4571ED62 |
| قاعدة البيانات: | BASE |
| ResultId |
1 |
|---|---|
| Header |
edsbas BASE edsbas.4571ED62 961 3 Academic Journal academicJournal 960.976379394531 |
| PLink |
https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&scope=site&db=edsbas&AN=edsbas.4571ED62&custid=s6537998&authtype=sso |
| FullText |
Array
(
[Availability] => 0
)
Array ( [0] => Array ( [Url] => http://fulir.irb.hr/8178/# [Name] => EDS - BASE [Category] => fullText [Text] => View record in BASE [MouseOverText] => View record in BASE ) ) |
| Items |
Array
(
[Name] => Title
[Label] => Title
[Group] => Ti
[Data] => Sample preparation and culture conditions effects on MALDI-TOF MS identification of bacteria: A review
)
Array ( [Name] => Author [Label] => Authors [Group] => Au [Data] => <searchLink fieldCode="AR" term="%22Topić+Popović%2C+Natalija%22">Topić Popović, Natalija</searchLink><br /><searchLink fieldCode="AR" term="%22Kazazić%2C+Snježana%22">Kazazić, Snježana</searchLink><br /><searchLink fieldCode="AR" term="%22Bojanić%2C+Krunoslav%22">Bojanić, Krunoslav</searchLink><br /><searchLink fieldCode="AR" term="%22Strunjak-Perović%2C+Ivančica%22">Strunjak-Perović, Ivančica</searchLink><br /><searchLink fieldCode="AR" term="%22Čož-Rakovac%2C+Rozelindra%22">Čož-Rakovac, Rozelindra</searchLink> ) Array ( [Name] => TitleSource [Label] => Source [Group] => Src [Data] => Mass spectrometry reviews ) Array ( [Name] => Publisher [Label] => Publisher Information [Group] => PubInfo [Data] => Wiley ) Array ( [Name] => DatePubCY [Label] => Publication Year [Group] => Date [Data] => 2023 ) Array ( [Name] => Subset [Label] => Collection [Group] => HoldingsInfo [Data] => Ruđer Bošković Institute Zagreb: Full-text Institutional Repository (FULIR) ) Array ( [Name] => Subject [Label] => Subject Terms [Group] => Su [Data] => <searchLink fieldCode="DE" term="%22Biology%22">Biology</searchLink><br /><searchLink fieldCode="DE" term="%22Veterinary+Medicine%22">Veterinary Medicine</searchLink><br /><searchLink fieldCode="DE" term="%22Biotechnology%22">Biotechnology</searchLink> ) Array ( [Name] => Abstract [Label] => Description [Group] => Ab [Data] => Matrix-assisted laser desorption/ionization time- of-flight mass spectrometry(MALDI-TOF MS) is an excellent tool for bacterial identification. It allows high throughput, sensitive and specific applications in clinical diagnostics and environ- mental research. Currently, there is no optimal standardized protocol for sample preparation and culture conditions to profile bacteria. The performance of MALDITOF MS is affected by several variables, such as sample preparation, culture media and culture conditions, incubation time/growth stage, incubation temperature, high salt content, blood in the culture media, and others. This review thus aims to clarify why a uniformed protocol is not plausible, to assess the effects these factors have onMALDITOF MS identification score, and discuss possible optimizations for its methodology, in relation to specific bacterial representatives and strain requirements. ) Array ( [Name] => TypeDocument [Label] => Document Type [Group] => TypDoc [Data] => article in journal/newspaper ) Array ( [Name] => Format [Label] => File Description [Group] => SrcInfo [Data] => application/pdf ) Array ( [Name] => Language [Label] => Language [Group] => Lang [Data] => English ) Array ( [Name] => NoteTitleSource [Label] => Relation [Group] => SrcInfo [Data] => info:eu-repo/grantAgreement/MZOS/ZP/N/A; http://fulir.irb.hr/8178/; https://doi.org/10.1002/mas.21739; http://fulir.irb.hr/8178/1/Mass%20Spec%20Rev_Maldi.pdf ) Array ( [Name] => DOI [Label] => DOI [Group] => ID [Data] => 10.1002/mas.21739 ) Array ( [Name] => URL [Label] => Availability [Group] => URL [Data] => http://fulir.irb.hr/8178/<br />http://fulir.irb.hr/8178/1/Mass%20Spec%20Rev_Maldi.pdf<br />https://doi.org/10.1002/mas.21739 ) Array ( [Name] => Copyright [Label] => Rights [Group] => Cpyrght [Data] => info:eu-repo/semantics/openAccess ) Array ( [Name] => AN [Label] => Accession Number [Group] => ID [Data] => edsbas.4571ED62 ) |
| RecordInfo |
Array
(
[BibEntity] => Array
(
[Identifiers] => Array
(
[0] => Array
(
[Type] => doi
[Value] => 10.1002/mas.21739
)
)
[Languages] => Array
(
[0] => Array
(
[Text] => English
)
)
[Subjects] => Array
(
[0] => Array
(
[SubjectFull] => Biology
[Type] => general
)
[1] => Array
(
[SubjectFull] => Veterinary Medicine
[Type] => general
)
[2] => Array
(
[SubjectFull] => Biotechnology
[Type] => general
)
)
[Titles] => Array
(
[0] => Array
(
[TitleFull] => Sample preparation and culture conditions effects on MALDI-TOF MS identification of bacteria: A review
[Type] => main
)
)
)
[BibRelationships] => Array
(
[HasContributorRelationships] => Array
(
[0] => Array
(
[PersonEntity] => Array
(
[Name] => Array
(
[NameFull] => Topić Popović, Natalija
)
)
)
[1] => Array
(
[PersonEntity] => Array
(
[Name] => Array
(
[NameFull] => Kazazić, Snježana
)
)
)
[2] => Array
(
[PersonEntity] => Array
(
[Name] => Array
(
[NameFull] => Bojanić, Krunoslav
)
)
)
[3] => Array
(
[PersonEntity] => Array
(
[Name] => Array
(
[NameFull] => Strunjak-Perović, Ivančica
)
)
)
[4] => Array
(
[PersonEntity] => Array
(
[Name] => Array
(
[NameFull] => Čož-Rakovac, Rozelindra
)
)
)
)
[IsPartOfRelationships] => Array
(
[0] => Array
(
[BibEntity] => Array
(
[Dates] => Array
(
[0] => Array
(
[D] => 01
[M] => 01
[Type] => published
[Y] => 2023
)
)
[Identifiers] => Array
(
[0] => Array
(
[Type] => issn-locals
[Value] => edsbas
)
[1] => Array
(
[Type] => issn-locals
[Value] => edsbas.oa
)
)
[Titles] => Array
(
[0] => Array
(
[TitleFull] => Mass spectrometry reviews
[Type] => main
)
)
)
)
)
)
)
|
| IllustrationInfo |