A Broadly Conserved Deoxycytidine Deaminase Protects Bacteria from Phage Infection

التفاصيل البيبلوغرافية
العنوان: A Broadly Conserved Deoxycytidine Deaminase Protects Bacteria from Phage Infection
المؤلفون: Ben J. Ridenhour, Brian Hsueh, Christopher M. Waters, Rhoades Cr, Wessel Aj, John A. Dover, Elg Ca, Kristin N. Parent, Eva M. Top, Janani Ravi, Geoffrey B. Severin
بيانات النشر: Cold Spring Harbor Laboratory, 2021.
سنة النشر: 2021
مصطلحات موضوعية: Genetics, biology, Vibrio cholerae, Deoxycytidylate Deaminase, medicine, Bacterial genome size, biology.organism_classification, medicine.disease_cause, Gene, El Tor, Vibrio, Bacteria, Deoxycytidine deaminase
الوصف: SUMMARYThe El Tor biotype of Vibrio cholerae is responsible for perpetuating the longest cholera pandemic in recorded history (1961-current). The genomic islands VSP-1 and -2 are two understudied genetic features that distinguish El Tor from previous pandemics. To understand their utility, we calculated the co-occurrence of VSP genes across bacterial genomes. This analysis predicted the previously uncharacterized vc0175, herein renamed deoxycytidylate deaminase Vibrio (dcdV), is in a gene network with dncV, a cyclic GMP-AMP synthase involved in phage defense. DcdV consists of two domains, a P-loop kinase and a deoxycytidylate deaminase, that are required for the deamination of dCTP and dCMP, inhibiting phage predation by corrupting cellular nucleotide concentrations. Additionally, DcdV is post-translationally inhibited by a unique noncoding RNA encoded 5’ of the dcdV locus. DcdV homologs are conserved in bacteria and eukaryotes and our results identify V. cholerae DcdV as the founding member of a previously undescribed bacterial phage defense system.
DOI: 10.1101/2021.03.31.437871
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::3f44459b0de16a85a75adf0f4733a1c5
https://doi.org/10.1101/2021.03.31.437871
Rights: OPEN
رقم الانضمام: edsair.doi...........3f44459b0de16a85a75adf0f4733a1c5
قاعدة البيانات: OpenAIRE
ResultId 1
Header edsair
OpenAIRE
edsair.doi...........3f44459b0de16a85a75adf0f4733a1c5
851
3

unknown
850.701354980469
PLink https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&scope=site&db=edsair&AN=edsair.doi...........3f44459b0de16a85a75adf0f4733a1c5&custid=s6537998&authtype=sso
FullText Array ( [Availability] => 0 )
Array ( [0] => Array ( [Url] => https://explore.openaire.eu/search/publication?articleId=doi_________::3f44459b0de16a85a75adf0f4733a1c5# [Name] => EDS - OpenAIRE [Category] => fullText [Text] => View record in OpenAIRE [MouseOverText] => View record in OpenAIRE ) )
Items Array ( [Name] => Title [Label] => Title [Group] => Ti [Data] => A Broadly Conserved Deoxycytidine Deaminase Protects Bacteria from Phage Infection )
Array ( [Name] => Author [Label] => Authors [Group] => Au [Data] => <searchLink fieldCode="AR" term="%22Ben+J%2E+Ridenhour%22">Ben J. Ridenhour</searchLink><br /><searchLink fieldCode="AR" term="%22Brian+Hsueh%22">Brian Hsueh</searchLink><br /><searchLink fieldCode="AR" term="%22Christopher+M%2E+Waters%22">Christopher M. Waters</searchLink><br /><searchLink fieldCode="AR" term="%22Rhoades+Cr%22">Rhoades Cr</searchLink><br /><searchLink fieldCode="AR" term="%22Wessel+Aj%22">Wessel Aj</searchLink><br /><searchLink fieldCode="AR" term="%22John+A%2E+Dover%22">John A. Dover</searchLink><br /><searchLink fieldCode="AR" term="%22Elg+Ca%22">Elg Ca</searchLink><br /><searchLink fieldCode="AR" term="%22Kristin+N%2E+Parent%22">Kristin N. Parent</searchLink><br /><searchLink fieldCode="AR" term="%22Eva+M%2E+Top%22">Eva M. Top</searchLink><br /><searchLink fieldCode="AR" term="%22Janani+Ravi%22">Janani Ravi</searchLink><br /><searchLink fieldCode="AR" term="%22Geoffrey+B%2E+Severin%22">Geoffrey B. Severin</searchLink> )
Array ( [Name] => Publisher [Label] => Publisher Information [Group] => PubInfo [Data] => Cold Spring Harbor Laboratory, 2021. )
Array ( [Name] => DatePubCY [Label] => Publication Year [Group] => Date [Data] => 2021 )
Array ( [Name] => Subject [Label] => Subject Terms [Group] => Su [Data] => <searchLink fieldCode="DE" term="%22Genetics%22">Genetics</searchLink><br /><searchLink fieldCode="DE" term="%22biology%22">biology</searchLink><br /><searchLink fieldCode="DE" term="%22Vibrio+cholerae%22">Vibrio cholerae</searchLink><br /><searchLink fieldCode="DE" term="%22Deoxycytidylate+Deaminase%22">Deoxycytidylate Deaminase</searchLink><br /><searchLink fieldCode="DE" term="%22medicine%22">medicine</searchLink><br /><searchLink fieldCode="DE" term="%22Bacterial+genome+size%22">Bacterial genome size</searchLink><br /><searchLink fieldCode="DE" term="%22biology%2Eorganism%5Fclassification%22">biology.organism_classification</searchLink><br /><searchLink fieldCode="DE" term="%22medicine%2Edisease%5Fcause%22">medicine.disease_cause</searchLink><br /><searchLink fieldCode="DE" term="%22Gene%22">Gene</searchLink><br /><searchLink fieldCode="DE" term="%22El+Tor%22">El Tor</searchLink><br /><searchLink fieldCode="DE" term="%22Vibrio%22">Vibrio</searchLink><br /><searchLink fieldCode="DE" term="%22Bacteria%22">Bacteria</searchLink><br /><searchLink fieldCode="DE" term="%22Deoxycytidine+deaminase%22">Deoxycytidine deaminase</searchLink> )
Array ( [Name] => Abstract [Label] => Description [Group] => Ab [Data] => SUMMARYThe El Tor biotype of Vibrio cholerae is responsible for perpetuating the longest cholera pandemic in recorded history (1961-current). The genomic islands VSP-1 and -2 are two understudied genetic features that distinguish El Tor from previous pandemics. To understand their utility, we calculated the co-occurrence of VSP genes across bacterial genomes. This analysis predicted the previously uncharacterized vc0175, herein renamed deoxycytidylate deaminase Vibrio (dcdV), is in a gene network with dncV, a cyclic GMP-AMP synthase involved in phage defense. DcdV consists of two domains, a P-loop kinase and a deoxycytidylate deaminase, that are required for the deamination of dCTP and dCMP, inhibiting phage predation by corrupting cellular nucleotide concentrations. Additionally, DcdV is post-translationally inhibited by a unique noncoding RNA encoded 5’ of the dcdV locus. DcdV homologs are conserved in bacteria and eukaryotes and our results identify V. cholerae DcdV as the founding member of a previously undescribed bacterial phage defense system. )
Array ( [Name] => DOI [Label] => DOI [Group] => ID [Data] => 10.1101/2021.03.31.437871 )
Array ( [Name] => URL [Label] => Access URL [Group] => URL [Data] => <link linkTarget="URL" linkTerm="https://explore.openaire.eu/search/publication?articleId=doi_________::3f44459b0de16a85a75adf0f4733a1c5" linkWindow="_blank">https://explore.openaire.eu/search/publication?articleId=doi_________::3f44459b0de16a85a75adf0f4733a1c5</link><br /><link linkTarget="URL" linkTerm="https://doi.org/10.1101/2021.03.31.437871" linkWindow="_blank">https://doi.org/10.1101/2021.03.31.437871</link> )
Array ( [Name] => Copyright [Label] => Rights [Group] => Cpyrght [Data] => OPEN )
Array ( [Name] => AN [Label] => Accession Number [Group] => ID [Data] => edsair.doi...........3f44459b0de16a85a75adf0f4733a1c5 )
RecordInfo Array ( [BibEntity] => Array ( [Identifiers] => Array ( [0] => Array ( [Type] => doi [Value] => 10.1101/2021.03.31.437871 ) ) [Languages] => Array ( [0] => Array ( [Text] => Undetermined ) ) [Subjects] => Array ( [0] => Array ( [SubjectFull] => Genetics [Type] => general ) [1] => Array ( [SubjectFull] => biology [Type] => general ) [2] => Array ( [SubjectFull] => Vibrio cholerae [Type] => general ) [3] => Array ( [SubjectFull] => Deoxycytidylate Deaminase [Type] => general ) [4] => Array ( [SubjectFull] => medicine [Type] => general ) [5] => Array ( [SubjectFull] => Bacterial genome size [Type] => general ) [6] => Array ( [SubjectFull] => biology.organism_classification [Type] => general ) [7] => Array ( [SubjectFull] => medicine.disease_cause [Type] => general ) [8] => Array ( [SubjectFull] => Gene [Type] => general ) [9] => Array ( [SubjectFull] => El Tor [Type] => general ) [10] => Array ( [SubjectFull] => Vibrio [Type] => general ) [11] => Array ( [SubjectFull] => Bacteria [Type] => general ) [12] => Array ( [SubjectFull] => Deoxycytidine deaminase [Type] => general ) ) [Titles] => Array ( [0] => Array ( [TitleFull] => A Broadly Conserved Deoxycytidine Deaminase Protects Bacteria from Phage Infection [Type] => main ) ) ) [BibRelationships] => Array ( [HasContributorRelationships] => Array ( [0] => Array ( [PersonEntity] => Array ( [Name] => Array ( [NameFull] => Ben J. Ridenhour ) ) ) [1] => Array ( [PersonEntity] => Array ( [Name] => Array ( [NameFull] => Brian Hsueh ) ) ) [2] => Array ( [PersonEntity] => Array ( [Name] => Array ( [NameFull] => Christopher M. Waters ) ) ) [3] => Array ( [PersonEntity] => Array ( [Name] => Array ( [NameFull] => Rhoades Cr ) ) ) [4] => Array ( [PersonEntity] => Array ( [Name] => Array ( [NameFull] => Wessel Aj ) ) ) [5] => Array ( [PersonEntity] => Array ( [Name] => Array ( [NameFull] => John A. Dover ) ) ) [6] => Array ( [PersonEntity] => Array ( [Name] => Array ( [NameFull] => Elg Ca ) ) ) [7] => Array ( [PersonEntity] => Array ( [Name] => Array ( [NameFull] => Kristin N. Parent ) ) ) [8] => Array ( [PersonEntity] => Array ( [Name] => Array ( [NameFull] => Eva M. Top ) ) ) [9] => Array ( [PersonEntity] => Array ( [Name] => Array ( [NameFull] => Janani Ravi ) ) ) [10] => Array ( [PersonEntity] => Array ( [Name] => Array ( [NameFull] => Geoffrey B. Severin ) ) ) ) [IsPartOfRelationships] => Array ( [0] => Array ( [BibEntity] => Array ( [Dates] => Array ( [0] => Array ( [D] => 31 [M] => 03 [Type] => published [Y] => 2021 ) ) [Identifiers] => Array ( [0] => Array ( [Type] => issn-locals [Value] => edsair ) [1] => Array ( [Type] => issn-locals [Value] => edsairFT ) ) ) ) ) ) )
IllustrationInfo