المؤلفون: Kanchi Baijal, Iryna Abramchuk, Carmen M. Herrera, Thien-Fah Mah, M. Stephen Trent, Mathieu Lavallée-Adam, Michael Downey

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Cancer, Infectious Diseases, Biological Sciences not elsewhere classified, using western blotting, required building blocks, molecular pathways impacted, free mass spectrometry, diverse pathways impacted, div >< p, confirm differential expression, amino acid biosynthesis, restores polymyxin sensitivity, resistant strains carrying, epta expression lack, cannot produce polyp, escherichia coli <, coli <, polymyxin resistance, epta proteins, 12 strains, e <, basr <, used label, uropathogenic isolate

Relation: https://figshare.com/articles/journal_contribution/Uncropped_and_unadjusted_western_blot_ponceau_S_polyP_gel_lipid_A_profile_and_spot_test_images_/25403145

الاتاحة: https://doi.org/10.1371/journal.pbio.3002558.s014

المؤلفون: Jin Yang, Junjie Dong, Haotian Li, Zhiqiang Gong, Bing Wang, Kaili Du, Chunqiang Zhang, Hangchuan Bi, Junfei Wang, Xinpeng Tian, Lingqiang Chen

مصطلحات موضوعية: Biochemistry, Cell Biology, Molecular Biology, Neuroscience, Physiology, Science Policy, measure key biomarkers, luciferase reporter assay, corresponding selective inhibitors, central nervous system, endoplasmic reticulum stress, spinal cord injury, neuronal regeneration within, er stress pathways, using western blotting, mediated downstream autophagy, direct downregulating effect, circhipk2 may play, 124 treatment reversed, a1 astrocyte markers, er stress, western blotting, a1 astrocyte, neuronal repair, injury caused, a1 phenotype, sci treatment, vivo <, vitro <, tg )

Relation: https://figshare.com/articles/journal_contribution/Circular_RNA_HIPK2_Promotes_A1_Astrocyte_Activation_after_Spinal_Cord_Injury_through_Autophagy_and_Endoplasmic_Reticulum_Stress_by_Modulating_miR-124-3p-Mediated_Smad2_Repression/24903803

الاتاحة: https://doi.org/10.1021/acsomega.3c06679.s001
https://figshare.com/articles/journal_contribution/Circular_RNA_HIPK2_Promotes_A1_Astrocyte_Activation_after_Spinal_Cord_Injury_through_Autophagy_and_Endoplasmic_Reticulum_Stress_by_Modulating_miR-124-3p-Mediated_Smad2_Repression/24903803

المؤلفون: Kanchi Baijal, Iryna Abramchuk, Carmen M. Herrera, Thien-Fah Mah, M. Stephen Trent, Mathieu Lavallée-Adam, Michael Downey

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Cancer, Infectious Diseases, Biological Sciences not elsewhere classified, using western blotting, required building blocks, molecular pathways impacted, free mass spectrometry, diverse pathways impacted, div >< p, confirm differential expression, amino acid biosynthesis, restores polymyxin sensitivity, resistant strains carrying, epta expression lack, cannot produce polyp, escherichia coli <, coli <, polymyxin resistance, epta proteins, 12 strains, e <, basr <, used label, uropathogenic isolate

Relation: https://figshare.com/articles/figure/Molecular_control_of_Arn_and_EptA_protein_expression_by_PPK_/25403106

الاتاحة: https://doi.org/10.1371/journal.pbio.3002558.s003

المؤلفون: Kanchi Baijal, Iryna Abramchuk, Carmen M. Herrera, Thien-Fah Mah, M. Stephen Trent, Mathieu Lavallée-Adam, Michael Downey

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Cancer, Infectious Diseases, Biological Sciences not elsewhere classified, using western blotting, required building blocks, molecular pathways impacted, free mass spectrometry, diverse pathways impacted, div >< p, confirm differential expression, amino acid biosynthesis, restores polymyxin sensitivity, resistant strains carrying, epta expression lack, cannot produce polyp, escherichia coli <, coli <, polymyxin resistance, epta proteins, 12 strains, e <, basr <, used label, uropathogenic isolate

Relation: https://figshare.com/articles/figure/Wild-type_i_E_i_i_coli_i_accumulate_polyP_in_MOPS_minimal_media_while_i_ppk_i_mutants_do_not_/25403100

الاتاحة: https://doi.org/10.1371/journal.pbio.3002558.s001

المؤلفون: Kanchi Baijal, Iryna Abramchuk, Carmen M. Herrera, Thien-Fah Mah, M. Stephen Trent, Mathieu Lavallée-Adam, Michael Downey

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Cancer, Infectious Diseases, Biological Sciences not elsewhere classified, using western blotting, required building blocks, molecular pathways impacted, free mass spectrometry, diverse pathways impacted, div >< p, confirm differential expression, amino acid biosynthesis, restores polymyxin sensitivity, resistant strains carrying, epta expression lack, cannot produce polyp, escherichia coli <, coli <, polymyxin resistance, epta proteins, 12 strains, e <, basr <, used label, uropathogenic isolate

Relation: https://figshare.com/articles/figure/Arn_expression_is_PPK-dependent_during_MOPS_starvation_/25403103

الاتاحة: https://doi.org/10.1371/journal.pbio.3002558.s002

المؤلفون: Kanchi Baijal, Iryna Abramchuk, Carmen M. Herrera, Thien-Fah Mah, M. Stephen Trent, Mathieu Lavallée-Adam, Michael Downey

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Cancer, Infectious Diseases, Biological Sciences not elsewhere classified, using western blotting, required building blocks, molecular pathways impacted, free mass spectrometry, diverse pathways impacted, div >< p, confirm differential expression, amino acid biosynthesis, restores polymyxin sensitivity, resistant strains carrying, epta expression lack, cannot produce polyp, escherichia coli <, coli <, polymyxin resistance, epta proteins, 12 strains, e <, basr <, used label, uropathogenic isolate

Relation: https://figshare.com/articles/dataset/Mass_spectrometry-identified_proteins_and_differential_expression_analysis_/25403121

الاتاحة: https://doi.org/10.1371/journal.pbio.3002558.s007

المؤلفون: Kanchi Baijal, Iryna Abramchuk, Carmen M. Herrera, Thien-Fah Mah, M. Stephen Trent, Mathieu Lavallée-Adam, Michael Downey

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Cancer, Infectious Diseases, Biological Sciences not elsewhere classified, using western blotting, required building blocks, molecular pathways impacted, free mass spectrometry, diverse pathways impacted, div >< p, confirm differential expression, amino acid biosynthesis, restores polymyxin sensitivity, resistant strains carrying, epta expression lack, cannot produce polyp, escherichia coli <, coli <, polymyxin resistance, epta proteins, 12 strains, e <, basr <, used label, uropathogenic isolate

Relation: https://figshare.com/articles/figure/The_role_of_PPK_in_the_regulation_of_lipid_A_modification_and_polymyxin_resistance_/25403112

الاتاحة: https://doi.org/10.1371/journal.pbio.3002558.s005

المؤلفون: Kanchi Baijal, Iryna Abramchuk, Carmen M. Herrera, Thien-Fah Mah, M. Stephen Trent, Mathieu Lavallée-Adam, Michael Downey

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Cancer, Infectious Diseases, Biological Sciences not elsewhere classified, using western blotting, required building blocks, molecular pathways impacted, free mass spectrometry, diverse pathways impacted, div >< p, confirm differential expression, amino acid biosynthesis, restores polymyxin sensitivity, resistant strains carrying, epta expression lack, cannot produce polyp, escherichia coli <, coli <, polymyxin resistance, epta proteins, 12 strains, e <, basr <, used label, uropathogenic isolate

Relation: https://figshare.com/articles/figure/Spent_MOPS_media_from_wild-type_cultures_does_not_induce_Arn-3Flag_expression_of_na_ve_cells_/25403118

الاتاحة: https://doi.org/10.1371/journal.pbio.3002558.s006

المؤلفون: Kanchi Baijal, Iryna Abramchuk, Carmen M. Herrera, Thien-Fah Mah, M. Stephen Trent, Mathieu Lavallée-Adam, Michael Downey

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Cancer, Infectious Diseases, Biological Sciences not elsewhere classified, using western blotting, required building blocks, molecular pathways impacted, free mass spectrometry, diverse pathways impacted, div >< p, confirm differential expression, amino acid biosynthesis, restores polymyxin sensitivity, resistant strains carrying, epta expression lack, cannot produce polyp, escherichia coli <, coli <, polymyxin resistance, epta proteins, 12 strains, e <, basr <, used label, uropathogenic isolate

Relation: https://figshare.com/articles/figure/Regulation_of_Arn_protein_expression_and_polymyxin_resistance_by_PPK_in_the_W3110_and_WD101_i_basR_i_sup_i_C_i_sup_backgrounds_/25403109

الاتاحة: https://doi.org/10.1371/journal.pbio.3002558.s004

المؤلفون: Kanchi Baijal, Iryna Abramchuk, Carmen M. Herrera, Thien-Fah Mah, M. Stephen Trent, Mathieu Lavallée-Adam, Michael Downey

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Cancer, Infectious Diseases, Biological Sciences not elsewhere classified, using western blotting, required building blocks, molecular pathways impacted, free mass spectrometry, diverse pathways impacted, div >< p, confirm differential expression, amino acid biosynthesis, restores polymyxin sensitivity, resistant strains carrying, epta expression lack, cannot produce polyp, escherichia coli <, coli <, polymyxin resistance, epta proteins, 12 strains, e <, basr <, used label, uropathogenic isolate

Relation: https://figshare.com/articles/dataset/Underlying_data_for_qPCR_analysis_presented_in_Fig_3G_/25403142

الاتاحة: https://doi.org/10.1371/journal.pbio.3002558.s013

المؤلفون: Kanchi Baijal, Iryna Abramchuk, Carmen M. Herrera, Thien-Fah Mah, M. Stephen Trent, Mathieu Lavallée-Adam, Michael Downey

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Cancer, Infectious Diseases, Biological Sciences not elsewhere classified, using western blotting, required building blocks, molecular pathways impacted, free mass spectrometry, diverse pathways impacted, div >< p, confirm differential expression, amino acid biosynthesis, restores polymyxin sensitivity, resistant strains carrying, epta expression lack, cannot produce polyp, escherichia coli <, coli <, polymyxin resistance, epta proteins, 12 strains, e <, basr <, used label, uropathogenic isolate

Relation: https://figshare.com/articles/dataset/Bacterial_strains_plasmids_and_qPCR_primers_used_for_this_work_/25403127

الاتاحة: https://doi.org/10.1371/journal.pbio.3002558.s009

المؤلفون: Kanchi Baijal, Iryna Abramchuk, Carmen M. Herrera, Thien-Fah Mah, M. Stephen Trent, Mathieu Lavallée-Adam, Michael Downey

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Cancer, Infectious Diseases, Biological Sciences not elsewhere classified, using western blotting, required building blocks, molecular pathways impacted, free mass spectrometry, diverse pathways impacted, div >< p, confirm differential expression, amino acid biosynthesis, restores polymyxin sensitivity, resistant strains carrying, epta expression lack, cannot produce polyp, escherichia coli <, coli <, polymyxin resistance, epta proteins, 12 strains, e <, basr <, used label, uropathogenic isolate

Relation: https://figshare.com/articles/dataset/Comparison_of_overlap_between_Varas_and_colleagues_and_Baijal_and_colleagues_mass_spectrometry_data_sets_/25403124

الاتاحة: https://doi.org/10.1371/journal.pbio.3002558.s008

المؤلفون: Kanchi Baijal, Iryna Abramchuk, Carmen M. Herrera, Thien-Fah Mah, M. Stephen Trent, Mathieu Lavallée-Adam, Michael Downey

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Cancer, Infectious Diseases, Biological Sciences not elsewhere classified, using western blotting, required building blocks, molecular pathways impacted, free mass spectrometry, diverse pathways impacted, div >< p, confirm differential expression, amino acid biosynthesis, restores polymyxin sensitivity, resistant strains carrying, epta expression lack, cannot produce polyp, escherichia coli <, coli <, polymyxin resistance, epta proteins, 12 strains, e <, basr <, used label, uropathogenic isolate

Relation: https://figshare.com/articles/dataset/Raw_data_for_volcano_plot_all-or-none_protein_bubble_plot_and_GO_term_analysis_presented_in_Fig_1B_1C_and_1E_/25403136

الاتاحة: https://doi.org/10.1371/journal.pbio.3002558.s011

المؤلفون: Kanchi Baijal, Iryna Abramchuk, Carmen M. Herrera, Thien-Fah Mah, M. Stephen Trent, Mathieu Lavallée-Adam, Michael Downey

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Cancer, Infectious Diseases, Biological Sciences not elsewhere classified, using western blotting, required building blocks, molecular pathways impacted, free mass spectrometry, diverse pathways impacted, div >< p, confirm differential expression, amino acid biosynthesis, restores polymyxin sensitivity, resistant strains carrying, epta expression lack, cannot produce polyp, escherichia coli <, coli <, polymyxin resistance, epta proteins, 12 strains, e <, basr <, used label, uropathogenic isolate

Relation: https://figshare.com/articles/dataset/Reagents_and_antibody_conditions_used_for_this_work_/25403133

الاتاحة: https://doi.org/10.1371/journal.pbio.3002558.s010

المؤلفون: Kanchi Baijal, Iryna Abramchuk, Carmen M. Herrera, Thien-Fah Mah, M. Stephen Trent, Mathieu Lavallée-Adam, Michael Downey

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Cancer, Infectious Diseases, Biological Sciences not elsewhere classified, using western blotting, required building blocks, molecular pathways impacted, free mass spectrometry, diverse pathways impacted, div >< p, confirm differential expression, amino acid biosynthesis, restores polymyxin sensitivity, resistant strains carrying, epta expression lack, cannot produce polyp, escherichia coli <, coli <, polymyxin resistance, epta proteins, 12 strains, e <, basr <, used label, uropathogenic isolate

Relation: https://figshare.com/articles/dataset/Raw_data_for_the_growth_curves_and_growth_curve_analysis_presented_in_Fig_2A_2D_/25403139

الاتاحة: https://doi.org/10.1371/journal.pbio.3002558.s012

المؤلفون: Kanchi Baijal, Iryna Abramchuk, Carmen M. Herrera, Thien-Fah Mah, M. Stephen Trent, Mathieu Lavallée-Adam, Michael Downey

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Cancer, Infectious Diseases, Biological Sciences not elsewhere classified, using western blotting, required building blocks, molecular pathways impacted, free mass spectrometry, diverse pathways impacted, div >< p, confirm differential expression, amino acid biosynthesis, restores polymyxin sensitivity, resistant strains carrying, epta expression lack, cannot produce polyp, escherichia coli <, coli <, polymyxin resistance, epta proteins, 12 strains, e <, basr <, used label, uropathogenic isolate

Relation: https://figshare.com/articles/figure/Broad_proteomic_changes_in_i_ppk_i_cells_during_stress_/25403151

الاتاحة: https://doi.org/10.1371/journal.pbio.3002558.g001

المؤلفون: Kanchi Baijal, Iryna Abramchuk, Carmen M. Herrera, Thien-Fah Mah, M. Stephen Trent, Mathieu Lavallée-Adam, Michael Downey

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Cancer, Infectious Diseases, Biological Sciences not elsewhere classified, using western blotting, required building blocks, molecular pathways impacted, free mass spectrometry, diverse pathways impacted, div >< p, confirm differential expression, amino acid biosynthesis, restores polymyxin sensitivity, resistant strains carrying, epta expression lack, cannot produce polyp, escherichia coli <, coli <, polymyxin resistance, epta proteins, 12 strains, e <, basr <, used label, uropathogenic isolate

Relation: https://figshare.com/articles/figure/Impact_of_amino_acid_deficiencies_on_growth_and_proteome_regulation_in_i_ppk_i_mutants_/25403154

الاتاحة: https://doi.org/10.1371/journal.pbio.3002558.g002

المؤلفون: Kanchi Baijal, Iryna Abramchuk, Carmen M. Herrera, Thien-Fah Mah, M. Stephen Trent, Mathieu Lavallée-Adam, Michael Downey

مصطلحات موضوعية: Biophysics, Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Cancer, Infectious Diseases, Biological Sciences not elsewhere classified, using western blotting, required building blocks, molecular pathways impacted, free mass spectrometry, diverse pathways impacted, div >< p, confirm differential expression, amino acid biosynthesis, restores polymyxin sensitivity, resistant strains carrying, epta expression lack, cannot produce polyp, escherichia coli <, coli <, polymyxin resistance, epta proteins, 12 strains, e <, basr <, used label, uropathogenic isolate

Relation: https://figshare.com/articles/figure/Consequences_of_LPS_mis-regulation_in_i_ppk_i_mutants_/25403160

الاتاحة: https://doi.org/10.1371/journal.pbio.3002558.g004