المؤلفون: Wei Ma, Shiyu Yuan, Zixian Wang, Kangle Niu, Fengyi Li, Lulu Liu, Lijuan Han, Xu Fang

المصدر: Engineering Microbiology, Vol 4, Iss 4, Pp 100151- (2024)

مصطلحات موضوعية: Hexose transporter, Glucose, Galactose, Mannose, Transmembrane α-helix 7, Sugar transport, Biotechnology, TP248.13-248.65, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2667370324000146; https://doaj.org/toc/2667-3703

URL الوصول: https://doaj.org/article/7ec2348b207f43c4872eb4a4169a4e25

المؤلفون: Alexander Bevacqua (11436855), Sachit Bakshi (11436858), Yu Xia (8822)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Neuroscience, Pharmacology, Biotechnology, Evolutionary Biology, Immunology, Inorganic Chemistry, Hematology, Plant Biology, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, two orthogonal planes, de novo <, principal component analysis, dominant deformation modes, constituent physical deformations, three cellular contexts, div >< p, using three α, three α, principal axis, individual modes, cellular location, helical deformations, helix deformations, twisting along, transmembrane α

Relation: https://figshare.com/articles/journal_contribution/The_scaling_exponents_derived_from_a_power_law_relationship_between_the_eigenvalues_i_i_of_the_first_three_deformation_modes_and_the_-helix_length_i_L_i_for_our_analysis_of_only_high-resolution_structures_3_/16623561

الاتاحة: https://doi.org/10.1371/journal.pone.0257318.s011

المؤلفون: Alexander Bevacqua (11436855), Sachit Bakshi (11436858), Yu Xia (8822)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Neuroscience, Pharmacology, Biotechnology, Evolutionary Biology, Immunology, Inorganic Chemistry, Hematology, Plant Biology, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, two orthogonal planes, de novo <, principal component analysis, dominant deformation modes, constituent physical deformations, three cellular contexts, div >< p, using three α, three α, principal axis, individual modes, cellular location, helical deformations, helix deformations, twisting along, transmembrane α

Relation: https://figshare.com/articles/journal_contribution/The_power_law_relationship_between_the_eigenvalues_i_i_of_the_first_three_deformation_modes_and_the_-helix_length_i_L_i_/16623558

الاتاحة: https://doi.org/10.1371/journal.pone.0257318.s010

المؤلفون: Qingshan Fu (4640884), James J. Chou (48364)

مصطلحات موضوعية: Biophysics, Biochemistry, Molecular Biology, Immunology, Hematology, Infectious Diseases, Virology, bicelle, lipid bilayer, Multiple studies, fusion proteins, transmembrane domain, transmembrane α- helix, SARS coronaviruses, membrane protein, TMH, SARS-CoV -2, membrane anchors, mediates membrane fusion, Trimeric Hydrophobic Zipper Mediates, NMR structure, future experiments, TMD structure, Intramembrane Assembly, TMD trimer, membrane-proximal regions, oligomer, trimeric core, S protein, S protein TMD

Relation: https://figshare.com/articles/journal_contribution/A_Trimeric_Hydrophobic_Zipper_Mediates_the_Intramembrane_Assembly_of_SARS-CoV_2_Spike/14736204

الاتاحة: https://doi.org/10.1021/jacs.1c02394.s001

المؤلفون: Xi Yin, Jing Yang, Feng Xiao, Yang Yang, Hong-Bin Shen

المصدر: Nano-Micro Letters, Vol 10, Iss 1, Pp 1-8 (2017)

مصطلحات موضوعية: Transmembrane α-helices, Structure prediction, Machine learning, Contact map prediction, Relative accessible surface area, Technology

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1007/s40820-017-0156-2; https://doaj.org/toc/2311-6706; https://doaj.org/toc/2150-5551

URL الوصول: https://doaj.org/article/ef7f2b6777ec48768320b379025a6794

المؤلفون: Nadine Flinner, Oliver Mirus, Enrico Schleiff

المصدر: International Journal of Molecular Sciences, Vol 15, Iss 8, Pp 14247-14268 (2014)

مصطلحات موضوعية: Glycophorin A dimerization, dimer interface formation, bitopic transmembrane α-helix, fatty acid dependency, MARTINI force field, Biology (General), QH301-705.5, Chemistry, QD1-999

Relation: http://www.mdpi.com/1422-0067/15/8/14247; https://doaj.org/toc/1422-0067; https://doaj.org/article/a5ebe79586924727ada1a3aefd28ee1e

الاتاحة: https://doi.org/10.3390/ijms150814247
https://doaj.org/article/a5ebe79586924727ada1a3aefd28ee1e

المؤلفون: Nadine Flinner, Oliver Mirus, Enrico Schleiff

المساهمون: The Pennsylvania State University CiteSeerX Archives

المصدر: http://www.mdpi.com/1422-0067/15/8/14247/pdf/.

مصطلحات موضوعية: Glycophorin A dimerization, dimer interface formation, bitopic transmembrane α-helix, fatty acid depen

Relation: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.691.5436; http://www.mdpi.com/1422-0067/15/8/14247/pdf/

الاتاحة: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.691.5436
http://www.mdpi.com/1422-0067/15/8/14247/pdf/

المؤلفون: Krč, Ajda

المساهمون: Novinec, Marko

مصطلحات موضوعية: politopični membranski proteini, transmembrane α helix, pulling forces, transmembranska α vijačnica, ko-translacijsko vstavljanje, polytopic membrane proteins, co-translational insertion, vlečne sile

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=od______3505::8550277938bb7498db8f179681e067cb
https://repozitorij.uni-lj.si/Dokument.php?id=133116&dn=

المؤلفون: Alexander Bevacqua (11436855), Sachit Bakshi (11436858), Yu Xia (8822)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Neuroscience, Pharmacology, Biotechnology, Evolutionary Biology, Immunology, Inorganic Chemistry, Hematology, Plant Biology, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, two orthogonal planes, de novo <, principal component analysis, dominant deformation modes, constituent physical deformations, three cellular contexts, div >< p, using three α, three α, principal axis, individual modes, cellular location, helical deformations, helix deformations, twisting along, transmembrane α

Relation: https://figshare.com/articles/figure/The_three_dominant_deformation_modes_seen_in_-helices_with_18_residues_i_L_i_18_/16623531

الاتاحة: https://doi.org/10.1371/journal.pone.0257318.s001

المؤلفون: Alexander Bevacqua (11436855), Sachit Bakshi (11436858), Yu Xia (8822)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Neuroscience, Pharmacology, Biotechnology, Evolutionary Biology, Immunology, Inorganic Chemistry, Hematology, Plant Biology, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, two orthogonal planes, de novo <, principal component analysis, dominant deformation modes, constituent physical deformations, three cellular contexts, div >< p, using three α, three α, principal axis, individual modes, cellular location, helical deformations, helix deformations, twisting along, transmembrane α

Relation: https://figshare.com/articles/figure/The_ten_principal_components_with_the_largest_eigenvalues_i_i_from_18-residue_transmembrane_-helices_i_N_i_2617_extramembrane_-helices_i_N_i_428_and_-helices_in_soluble_proteins_i_N_i_5360_all_for_our_analysis_of_only_high-resolution_struct/16623543

الاتاحة: https://doi.org/10.1371/journal.pone.0257318.s005

المؤلفون: Alexander Bevacqua (11436855), Sachit Bakshi (11436858), Yu Xia (8822)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Neuroscience, Pharmacology, Biotechnology, Evolutionary Biology, Immunology, Inorganic Chemistry, Hematology, Plant Biology, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, two orthogonal planes, de novo <, principal component analysis, dominant deformation modes, constituent physical deformations, three cellular contexts, div >< p, using three α, three α, principal axis, individual modes, cellular location, helical deformations, helix deformations, twisting along, transmembrane α

Relation: https://figshare.com/articles/figure/Amino_acid_distribution_representative_of_18-residue_transmembrane_-helices_i_N_i_6075_extramembrane_-helices_i_N_i_2198_and_-helices_in_soluble_proteins_i_N_i_6716_/16623534

الاتاحة: https://doi.org/10.1371/journal.pone.0257318.s002

المؤلفون: Alexander Bevacqua (11436855), Sachit Bakshi (11436858), Yu Xia (8822)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Neuroscience, Pharmacology, Biotechnology, Evolutionary Biology, Immunology, Inorganic Chemistry, Hematology, Plant Biology, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, two orthogonal planes, de novo <, principal component analysis, dominant deformation modes, constituent physical deformations, three cellular contexts, div >< p, using three α, three α, principal axis, individual modes, cellular location, helical deformations, helix deformations, twisting along, transmembrane α

Relation: https://figshare.com/articles/figure/A_pair_of_normalized_histograms_presenting_the_resolution_of_the_structures_used_to_pursue_our_original_analysis_/16623540

الاتاحة: https://doi.org/10.1371/journal.pone.0257318.s004

المؤلفون: Alexander Bevacqua (11436855), Sachit Bakshi (11436858), Yu Xia (8822)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Neuroscience, Pharmacology, Biotechnology, Evolutionary Biology, Immunology, Inorganic Chemistry, Hematology, Plant Biology, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, two orthogonal planes, de novo <, principal component analysis, dominant deformation modes, constituent physical deformations, three cellular contexts, div >< p, using three α, three α, principal axis, individual modes, cellular location, helical deformations, helix deformations, twisting along, transmembrane α

Relation: https://figshare.com/articles/figure/The_ten_principal_components_with_the_largest_eigenvalues_i_i_from_12-_15-_21-_and_24-residue_transmembrane_-helices_extramembrane_-helices_and_-helices_in_soluble_proteins_/16623537

الاتاحة: https://doi.org/10.1371/journal.pone.0257318.s003

المؤلفون: Alexander Bevacqua (11436855), Sachit Bakshi (11436858), Yu Xia (8822)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Neuroscience, Pharmacology, Biotechnology, Evolutionary Biology, Immunology, Inorganic Chemistry, Hematology, Plant Biology, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, two orthogonal planes, de novo <, principal component analysis, dominant deformation modes, constituent physical deformations, three cellular contexts, div >< p, using three α, three α, principal axis, individual modes, cellular location, helical deformations, helix deformations, twisting along, transmembrane α

Relation: https://figshare.com/articles/figure/An_overview_of_our_transmembrane_-helix_annotation_methods_/16623552

الاتاحة: https://doi.org/10.1371/journal.pone.0257318.s008

المؤلفون: Alexander Bevacqua (11436855), Sachit Bakshi (11436858), Yu Xia (8822)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Neuroscience, Pharmacology, Biotechnology, Evolutionary Biology, Immunology, Inorganic Chemistry, Hematology, Plant Biology, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, two orthogonal planes, de novo <, principal component analysis, dominant deformation modes, constituent physical deformations, three cellular contexts, div >< p, using three α, three α, principal axis, individual modes, cellular location, helical deformations, helix deformations, twisting along, transmembrane α

Relation: https://figshare.com/articles/figure/S7_Fig_-/16623549

الاتاحة: https://doi.org/10.1371/journal.pone.0257318.s007

المؤلفون: Alexander Bevacqua (11436855), Sachit Bakshi (11436858), Yu Xia (8822)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Neuroscience, Pharmacology, Biotechnology, Evolutionary Biology, Immunology, Inorganic Chemistry, Hematology, Plant Biology, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, two orthogonal planes, de novo <, principal component analysis, dominant deformation modes, constituent physical deformations, three cellular contexts, div >< p, using three α, three α, principal axis, individual modes, cellular location, helical deformations, helix deformations, twisting along, transmembrane α

Relation: https://figshare.com/articles/figure/An_overview_of_our_-helix_superposition_methods_/16623555

الاتاحة: https://doi.org/10.1371/journal.pone.0257318.s009

المؤلفون: Alexander Bevacqua (11436855), Sachit Bakshi (11436858), Yu Xia (8822)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Neuroscience, Pharmacology, Biotechnology, Evolutionary Biology, Immunology, Inorganic Chemistry, Hematology, Plant Biology, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, two orthogonal planes, de novo <, principal component analysis, dominant deformation modes, constituent physical deformations, three cellular contexts, div >< p, using three α, three α, principal axis, individual modes, cellular location, helical deformations, helix deformations, twisting along, transmembrane α

Relation: https://figshare.com/articles/figure/The_three_dominant_deformation_modes_correspond_to_three_physical_deformations_seen_in_-helices_with_18_residues_i_L_i_18_/16623564

الاتاحة: https://doi.org/10.1371/journal.pone.0257318.g001

المؤلفون: Alexander Bevacqua (11436855), Sachit Bakshi (11436858), Yu Xia (8822)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Neuroscience, Pharmacology, Biotechnology, Evolutionary Biology, Immunology, Inorganic Chemistry, Hematology, Plant Biology, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, two orthogonal planes, de novo <, principal component analysis, dominant deformation modes, constituent physical deformations, three cellular contexts, div >< p, using three α, three α, principal axis, individual modes, cellular location, helical deformations, helix deformations, twisting along, transmembrane α

Relation: https://figshare.com/articles/figure/Each_line_represents_the_percentage_of_total_variance_explained_by_the_first_ten_principal_components_for_-helices_of_a_certain_length_i_L_i_for_our_analysis_of_only_high_resolution_structures_3_/16623546

الاتاحة: https://doi.org/10.1371/journal.pone.0257318.s006

المؤلفون: Alexander Bevacqua (11436855), Sachit Bakshi (11436858), Yu Xia (8822)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Neuroscience, Pharmacology, Biotechnology, Evolutionary Biology, Immunology, Inorganic Chemistry, Hematology, Plant Biology, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, two orthogonal planes, de novo <, principal component analysis, dominant deformation modes, constituent physical deformations, three cellular contexts, div >< p, using three α, three α, principal axis, individual modes, cellular location, helical deformations, helix deformations, twisting along, transmembrane α

Relation: https://figshare.com/articles/figure/Each_line_represents_the_percentage_of_total_variance_explained_by_the_first_ten_principal_components_for_-helices_of_a_certain_length_i_L_i_/16623570

الاتاحة: https://doi.org/10.1371/journal.pone.0257318.g003

المؤلفون: Alexander Bevacqua (11436855), Sachit Bakshi (11436858), Yu Xia (8822)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Neuroscience, Pharmacology, Biotechnology, Evolutionary Biology, Immunology, Inorganic Chemistry, Hematology, Plant Biology, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, two orthogonal planes, de novo <, principal component analysis, dominant deformation modes, constituent physical deformations, three cellular contexts, div >< p, using three α, three α, principal axis, individual modes, cellular location, helical deformations, helix deformations, twisting along, transmembrane α

Relation: https://figshare.com/articles/figure/The_ten_principal_components_with_the_largest_eigenvalues_i_i_from_18-residue_transmembrane_-helices_i_N_i_6075_extramembrane_-helices_i_N_i_2198_and_-helices_in_soluble_proteins_i_N_i_6716_/16623567

الاتاحة: https://doi.org/10.1371/journal.pone.0257318.g002