المؤلفون: Vyshenska, Dariia, Sampara, Pranav, Singh, Kanwar, Tomatsu, Andy, Kauffman, W Berkeley, Nuccio, Erin E, Blazewicz, Steven J, Pett-Ridge, Jennifer, Louie, Katherine B, Varghese, Neha, Kellom, Matthew, Clum, Alicia, Riley, Robert, Roux, Simon, Eloe-Fadrosh, Emiley A, Ziels, Ryan M, Malmstrom, Rex R

المصدر: mSystems. 8(4)

مصطلحات موضوعية: Microbiology, Biological Sciences, Genetics, Human Genome, 2.5 Research design and methodologies (aetiology), Humans, Metagenomics, RNA, Ribosomal, 16S, DNA, Isotopes, Microbiota, stable isotope probing, metagenomics, DNA-SIP, co-assembly, internal standards, spike-ins

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/2r57q46g
https://escholarship.org/content/qt2r57q46g/qt2r57q46g.pdf

المؤلفون: Iwaszkiewicz-Eggebrecht, Elzbieta, Granqvist, Emma, Buczek, Mateusz, Prus, Monika, Kudlicka, Jan, Roslin, Tomas, Tack, Ayco J. M., 1978, Andersson, Anders F., Miraldo, Andreia, Ronquist, Fredrik, Łukasik, Piotr

المصدر: Methods in Ecology and Evolution. 14(4):1130-1146

مصطلحات موضوعية: abundance estimation, homogenization, Malaise trap, metabarcoding, mock communities, non-destructive mild lysis, spike-ins

وصف الملف: print

URL الوصول: https://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-215905
https://doi.org/10.1111/2041-210X.14073

المؤلفون: Dariia Vyshenska, Pranav Sampara, Kanwar Singh, Andy Tomatsu, W. Berkeley Kauffman, Erin E. Nuccio, Steven J. Blazewicz, Jennifer Pett-Ridge, Katherine B. Louie, Neha Varghese, Matthew Kellom, Alicia Clum, Robert Riley, Simon Roux, Emiley A. Eloe-Fadrosh, Ryan M. Ziels, Rex R. Malmstrom

المصدر: mSystems, Vol 8, Iss 4 (2023)

مصطلحات موضوعية: stable isotope probing, metagenomics, DNA-SIP, co-assembly, internal standards, spike-ins, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2379-5077

URL الوصول: https://doaj.org/article/89714e1557644055a52c06f7ca084abc

المؤلفون: Lifen Gao, Lun Li, Bin Fang, Zhiwei Fang, Yanghai Xiang, Min Zhang, Junfei Zhou, Huiyin Song, Lihong Chen, Tiantian Li, Huafeng Xiao, Renjing Wan, Yongzhong Jiang, Hai Peng

المصدر: Microbiology Spectrum, Vol 11, Iss 3 (2023)

مصطلحات موضوعية: carryover contamination, amplicon sequencing, synthetic DNA spike-ins, dUTP/UDG, SARS-CoV-2, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2165-0497

URL الوصول: https://doaj.org/article/2d11c8cd5e72414d820da4778a722c59

المؤلفون: Sickel, Wiebke, Zizka, Vera, Scherges, Alice, Bourlat, Sarah J., Dieker, Petra

المصدر: Metabarcoding and Metagenomics, 7, e112290, (2023-11-23)

مصطلحات موضوعية: abundance, biodiversity monitoring, COI, insects, metabarcoding, spike-ins

Relation: https://doi.org/10.3897/mbmg.7.112290.suppl3; https://doi.org/10.3897/mbmg.7.112290.suppl2; https://doi.org/10.3897/mbmg.7.112290.suppl1; https://doi.org/10.3897/mbmg.7.112290.suppl4; https://zenodo.org/record/10209776; https://zenodo.org/record/10209778; https://zenodo.org/record/10209780; https://zenodo.org/record/10209782; https://doi.org/10.1139/gen-2019-0054; https://doi.org/10.1111/1755-0998.13014; https://doi.org/10.1111/2041-210X.12849; https://doi.org/10.1371/journal.pone.0219135; https://doi.org/10.1111/mec.14844; https://doi.org/10.1111/1755-0998.13337; https://doi.org/10.1111/2041-210X.13428; https://doi.org/10.1111/mec.15591; https://doi.org/10.1371/journal.pone.0282715; https://doi.org/10.1371/journal.pone.0090529; https://doi.org/10.1038/s41598-020-61198-6; https://doi.org/10.1007/s10592-015-0775-4; https://doi.org/10.1038/s41598-021-85855-6; https://doi.org/10.1371/journal.pone.0226527; https://doi.org/10.1139/gen-2015-0200; https://doi.org/10.1111/mec.14840; 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https://doi.org/10.7717/peerj.10862; https://doi.org/10.3732/apps.1500043; https://doi.org/10.1111/mec.14975; https://doi.org/10.1139/gen-2018-0096; https://doi.org/10.1002/edn3.290; https://doi.org/10.1371/journal.pone.0228561; https://doi.org/10.1002/ece3.8991; https://doi.org/10.1371/journal.pone.0162493; https://doi.org/10.1038/s41586-019-1684-3; https://doi.org/10.1002/ece3.8239; https://doi.org/10.1111/mec.15851; https://doi.org/10.1002/ece3.5153; https://doi.org/10.1038/s41598-019-40243-z; https://doi.org/10.1186/s12915-021-01141-x; https://doi.org/10.1038/s41559-023-02066-0; https://doi.org/10.1371/journal.pone.0245611; https://doi.org/10.1111/eva.12644; https://doi.org/10.1111/1755-0998.12959; https://doi.org/10.1016/j.tig.2023.01.005; https://doi.org/10.1002/ece3.4809; https://doi.org/10.1186/s40168-018-0491-7; https://doi.org/10.1111/1755-0998.13231; https://doi.org/10.1111/1755-0998.13148; https://doi.org/10.1126/science.aax9931; https://doi.org/10.1016/j.tree.2022.06.001; https://doi.org/10.1098/rsbl.2021.0554; https://doi.org/10.1016/j.baae.2010.05.003; https://doi.org/10.1111/1365-2664.12158; https://doi.org/10.3897/aca.4.e65142; https://doi.org/10.1038/hdy.2016.43; https://doi.org/10.1111/1755-0998.12751; https://doi.org/10.1111/aen.12384; https://doi.org/10.1111/mec.15811; https://doi.org/10.1016/j.agee.2020.107296; https://doi.org/10.1111/1755-0998.13567; https://doi.org/10.1101/2020.07.07.187666; https://doi.org/10.1002/ece3.7113; https://doi.org/10.1111/j.2041-210X.2012.00198.x; https://doi.org/10.1002/ece3.6042; https://doi.org/10.1111/mec.15060; https://doi.org/10.1016/bs.aecr.2020.01.001; https://doi.org/10.1139/gen-2018-0048; https://zenodo.org/communities/biosyslit; https://doi.org/10.3897/mbmg.7.112290; oai:zenodo.org:10411566

الاتاحة: https://doi.org/10.3897/mbmg.7.112290

المؤلفون: Salim Ghannoum, Waldir Leoncio Netto, Damiano Fantini, Benjamin Ragan-Kelley, Amirabbas Parizadeh, Emma Jonasson, Anders Ståhlberg, Hesso Farhan, Alvaro Köhn-Luque

المصدر: International Journal of Molecular Sciences; Volume 22; Issue 3; Pages: 1399

مصطلحات موضوعية: single-cell sequencing, normalization, gene filtering, ERCC spike-ins, biomarkers, DEGs, decision trees, network analysis, Jupyter notebook, binder

جغرافية الموضوع: agris

وصف الملف: application/pdf

Relation: Molecular Genetics and Genomics; https://dx.doi.org/10.3390/ijms22031399

الاتاحة: https://doi.org/10.3390/ijms22031399

المؤلفون: Elzbieta Iwaszkiewicz‐Eggebrecht, Emma Granqvist, Mateusz Buczek, Monika Prus, Jan Kudlicka, Tomas Roslin, Ayco J. M. Tack, Anders F. Andersson, Andreia Miraldo, Fredrik Ronquist, Piotr Łukasik

المصدر: Methods in Ecology and Evolution

مصطلحات موضوعية: mock communities, spike-ins, non-destructive mild lysis, non- destructive mild lysis, Ecology, abundance estimation, Ecological Modeling, metabarcoding, homogenization, Malaise trap, Ecology, Evolution, Behavior and Systematics

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1432a341343b81e7c20a32334b19d1e7
https://pub.epsilon.slu.se/30887/

المؤلفون: Sickel, Wiebke, Zizka, Vera, Scherges, Alice, Bourlat, Sarah J., Dieker, Petra

مصطلحات موضوعية: abundance, biodiversity monitoring, COI, insects, metabarcoding, spike-ins

Relation: https://doi.org/10.3897/mbmg.7.112290; https://zenodo.org/communities/biosyslit; https://doi.org/10.3897/mbmg.7.112290.suppl3; oai:zenodo.org:10209776

الاتاحة: https://doi.org/10.3897/mbmg.7.112290.suppl3

المؤلفون: Sickel, Wiebke, Zizka, Vera, Scherges, Alice, Bourlat, Sarah J., Dieker, Petra

مصطلحات موضوعية: abundance, biodiversity monitoring, COI, insects, metabarcoding, spike-ins

Relation: https://doi.org/10.3897/mbmg.7.112290; https://zenodo.org/communities/biosyslit; https://doi.org/10.3897/mbmg.7.112290.suppl2; oai:zenodo.org:10209778

الاتاحة: https://doi.org/10.3897/mbmg.7.112290.suppl2

المؤلفون: Sickel, Wiebke, Zizka, Vera, Scherges, Alice, Bourlat, Sarah J., Dieker, Petra

مصطلحات موضوعية: abundance, biodiversity monitoring, COI, insects, metabarcoding, spike-ins

Relation: https://doi.org/10.3897/mbmg.7.112290; https://zenodo.org/communities/biosyslit; https://doi.org/10.3897/mbmg.7.112290.suppl1; oai:zenodo.org:10209780

الاتاحة: https://doi.org/10.3897/mbmg.7.112290.suppl1

المؤلفون: Sickel, Wiebke, Zizka, Vera, Scherges, Alice, Bourlat, Sarah J., Dieker, Petra

مصطلحات موضوعية: abundance, biodiversity monitoring, COI, insects, metabarcoding, spike-ins

Relation: https://doi.org/10.3897/mbmg.7.112290; https://zenodo.org/communities/biosyslit; https://doi.org/10.3897/mbmg.7.112290.suppl4; oai:zenodo.org:10209782

الاتاحة: https://doi.org/10.3897/mbmg.7.112290.suppl4

المؤلفون: McGee, Warren A., Pimentel, Harold, Pachter, Lior, Wu, Jane Y.

مصطلحات موضوعية: Compositional Data Analysis, sleuth-ALR, absSimSeq, Seq, Differential Analysis, Normalization, spike-ins

Relation: https://doi.org/10.1101/564955; eprintid:93419

الاتاحة: https://doi.org/10.1101/564955

المؤلفون: Diem-Trang Tran, Matthew Might

المصدر: PeerJ, Vol 9, p e12233 (2021)
PeerJ

مصطلحات موضوعية: Normalization (statistics), Bioinformatics, Computer science, Performance measure, Assessment, computer.software_genre, General Biochemistry, Genetics and Molecular Biology, Spike-ins, Set (abstract data type), Transcriptomics, Parametric statistics, Ground truth, Transcriptomic profiling, Public datasets, Data collection, General Neuroscience, Data Science, Computational Biology, General Medicine, Benchmarking, Expression (mathematics), Normalization, Metric (mathematics), Medicine, Data mining, RNA-seq, SVD, General Agricultural and Biological Sciences, computer

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6586974a3af732e3f0cba96e6f3536b6
https://peerj.com/articles/12233.pdf

المؤلفون: DAL MOLIN, ALESSANDRA, Di Camillo, Barbara

المساهمون: DAL MOLIN, Alessandra, Di Camillo, Barbara

مصطلحات موضوعية: Unique Molecular Identifier, experimental design, experimental protocol, normalization, single-cell RNA-seq, spike-ins

Relation: info:eu-repo/semantics/altIdentifier/pmid/29394315; info:eu-repo/semantics/altIdentifier/wos/WOS:000493041400028; journal:BRIEFINGS IN BIOINFORMATICS; http://hdl.handle.net/11577/3267609; info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85072991191

الاتاحة: http://hdl.handle.net/11577/3267609
https://doi.org/10.1093/bib/bby007

المؤلفون: Alessandra Dal Molin, Barbara Di Camillo

مصطلحات موضوعية: 0301 basic medicine, Normalization (statistics), Quality Control, experimental design, Computer science, Computational biology, Cell Separation, Field (computer science), Transcriptome, 03 medical and health sciences, 0302 clinical medicine, Preprocessor, Animals, Humans, RNA, Messenger, RNA-Seq, Molecular Biology, experimental protocols, spike-ins, Unique Molecular Identifiers, single-cell RNA-seq, Design of experiments, Computational Biology, Reverse Transcription, normalization, Identifier, Identification (information), 030104 developmental biology, Workflow, Single-Cell Analysis, Nucleic Acid Amplification Techniques, 030217 neurology & neurosurgery, Information Systems

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a0e75906d831f675ab51d4958baea13e
http://hdl.handle.net/11577/3267609

المؤلفون: Drozd, Tomáš

المساهمون: Mehnen, Lars, Turk, Andreas

مصطلحات موضوعية: Spike-in controls, ERCCs, SIRVs, technická variabilita, analýza změn v genové expresi, sekvenování RNA, Technical variability, RNA-seq, differential expression, spike-ins

وصف الملف: application/pdf; text/html

Relation: DROZD, T. Quality assurance of RNA-Seq workflows with spike-ins controls [online]. Brno: Vysoké učení technické v Brně. Fakulta elektrotechniky a komunikačních technologií. 2019.; 113692; http://hdl.handle.net/11012/208430

الاتاحة: http://hdl.handle.net/11012/208430

المؤلفون: Drozd, Tomáš

المساهمون: Mehnen, Lars, Turk, Andreas

المصدر: DROZD, T. Quality assurance of RNA-Seq workflows with spike-ins controls [online]. Brno: Vysoké učení technické v Brně. Fakulta elektrotechniky a komunikačních technologií. 2019.

مصطلحات موضوعية: Spike-in controls, ERCCs, SIRVs, technická variabilita, analýza změn v genové expresi, sekvenování RNA, Technical variability, RNA-seq, differential expression, spike-ins

وصف الملف: application/pdf; text/html

Relation: http://hdl.handle.net/11012/208430

الاتاحة: http://hdl.handle.net/11012/208430

المؤلفون: Mehnen, Lars, Turk, Andreas, Drozd, Tomáš

مصطلحات الفهرس: Spike-in controls, ERCCs, SIRVs, technická variabilita, analýza změn v genové expresi, sekvenování RNA, Technical variability, RNA-seq, differential expression, spike-ins, Text

URL: http://hdl.handle.net/11012/208430

المؤلفون: Mehnen, Lars, Turk, Andreas, Drozd, Tomáš

مصطلحات الفهرس: Spike-in controls, ERCCs, SIRVs, technická variabilita, analýza změn v genové expresi, sekvenování RNA, Technical variability, RNA-seq, differential expression, spike-ins, Text

URL: http://hdl.handle.net/11012/208430

المؤلفون: Mehnen, Lars, Turk, Andreas, Drozd, Tomáš

مصطلحات الفهرس: Spike-in controls, ERCCs, SIRVs, technická variabilita, analýza změn v genové expresi, sekvenování RNA, Technical variability, RNA-seq, differential expression, spike-ins, Text

URL: http://hdl.handle.net/11012/208430