نتائج البحث - "silico characterized structures"

1

Academic Journal

Relative gene expression fold change of MrST in response to V . parahaemolyticus infection.

المؤلفون: Tze Chiew Christie Soo (11570569), Subha Bhassu (416376)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, underlying host mechanisms, silico characterized structures, infection time points, div >< p, differential gene expressions, shrimp aquaculture industry, vibrio parahaemolyticus <, significant differences observed, penaeus monodon <, macrobrachium rosenbergii <, glutamic acid )], vital signalling roles, important sequence conservation, comparative transcriptomic analysis, >< sub xmlns, significant gene expression, shrimp stat gene, associated functional degs, stat gene, shrimp health

Relation: https://figshare.com/articles/journal_contribution/Relative_gene_expression_fold_change_of_i_MrST_i_in_response_to_i_V_i_i_parahaemolyticus_i_infection_/16819867

الاتاحة: https://doi.org/10.1371/journal.pone.0258655.s002

View record in BASE

2

Academic Journal

Relative gene expression fold change of MrST in response to WSSV infection.

المؤلفون: Tze Chiew Christie Soo (11570569), Subha Bhassu (416376)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, underlying host mechanisms, silico characterized structures, infection time points, div >< p, differential gene expressions, shrimp aquaculture industry, vibrio parahaemolyticus <, significant differences observed, penaeus monodon <, macrobrachium rosenbergii <, glutamic acid )], vital signalling roles, important sequence conservation, comparative transcriptomic analysis, >< sub xmlns, significant gene expression, shrimp stat gene, associated functional degs, stat gene, shrimp health

Relation: https://figshare.com/articles/journal_contribution/Relative_gene_expression_fold_change_of_i_MrST_i_in_response_to_WSSV_infection_/16819864

الاتاحة: https://doi.org/10.1371/journal.pone.0258655.s001

View record in BASE

3

Academic Journal

Relative gene expression fold change of PmST in response to WSSV infection.

المؤلفون: Tze Chiew Christie Soo (11570569), Subha Bhassu (416376)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, underlying host mechanisms, silico characterized structures, infection time points, div >< p, differential gene expressions, shrimp aquaculture industry, vibrio parahaemolyticus <, significant differences observed, penaeus monodon <, macrobrachium rosenbergii <, glutamic acid )], vital signalling roles, important sequence conservation, comparative transcriptomic analysis, >< sub xmlns, significant gene expression, shrimp stat gene, associated functional degs, stat gene, shrimp health

Relation: https://figshare.com/articles/journal_contribution/Relative_gene_expression_fold_change_of_i_PmST_i_in_response_to_WSSV_infection_/16819870

الاتاحة: https://doi.org/10.1371/journal.pone.0258655.s003

View record in BASE

4

Academic Journal

Relative gene expression fold change of PmST in response to Vp AHPND infection.

المؤلفون: Tze Chiew Christie Soo (11570569), Subha Bhassu (416376)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, underlying host mechanisms, silico characterized structures, infection time points, div >< p, differential gene expressions, shrimp aquaculture industry, vibrio parahaemolyticus <, significant differences observed, penaeus monodon <, macrobrachium rosenbergii <, glutamic acid )], vital signalling roles, important sequence conservation, comparative transcriptomic analysis, >< sub xmlns, significant gene expression, shrimp stat gene, associated functional degs, stat gene, shrimp health

Relation: https://figshare.com/articles/journal_contribution/Relative_gene_expression_fold_change_of_i_PmST_i_in_response_to_i_Vp_i_sub_AHPND_sub_infection_/16819873

الاتاحة: https://doi.org/10.1371/journal.pone.0258655.s004

View record in BASE

5

Academic Journal

Sequence comparison of MrST , LvST , PmST (cross-bred disease tolerant strain) [labelled as PmST(New)], and PmST (Accession number: AY327491.1) STAT nucleotide sequences using Clustal Omega software.

المؤلفون: Tze Chiew Christie Soo (11570569), Subha Bhassu (416376)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, underlying host mechanisms, silico characterized structures, infection time points, div >< p, differential gene expressions, shrimp aquaculture industry, vibrio parahaemolyticus <, significant differences observed, penaeus monodon <, macrobrachium rosenbergii <, glutamic acid )], vital signalling roles, important sequence conservation, comparative transcriptomic analysis, >< sub xmlns, significant gene expression, shrimp stat gene, associated functional degs, stat gene, shrimp health

Relation: https://figshare.com/articles/journal_contribution/Sequence_comparison_of_i_MrST_i_i_LvST_i_i_PmST_i_cross-bred_disease_tolerant_strain_labelled_as_PmST_New_and_i_PmST_i_Accession_number_AY327491_1_STAT_nucleotide_sequences_using_Clustal_Omega_software_/16819876

الاتاحة: https://doi.org/10.1371/journal.pone.0258655.s005

View record in BASE

6

Academic Journal

Phylogenetic comparison of M . rosenbergii STAT (MrST) and P . monodon STAT (PmST) (disease tolerant strain and AY327491.1) sequences with 13 homologous sequences retrieved from NCBI database using MEGA 7 software through Maximum Likelihood method with bootstrap value of 1000.

المؤلفون: Tze Chiew Christie Soo (11570569), Subha Bhassu (416376)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, underlying host mechanisms, silico characterized structures, infection time points, div >< p, differential gene expressions, shrimp aquaculture industry, vibrio parahaemolyticus <, significant differences observed, penaeus monodon <, macrobrachium rosenbergii <, glutamic acid )], vital signalling roles, important sequence conservation, comparative transcriptomic analysis, >< sub xmlns, significant gene expression, shrimp stat gene, associated functional degs, stat gene, shrimp health

Relation: https://figshare.com/articles/journal_contribution/Phylogenetic_comparison_of_i_M_i_i_rosenbergii_i_STAT_MrST_and_i_P_i_i_monodon_i_STAT_PmST_disease_tolerant_strain_and_AY327491_1_sequences_with_13_homologous_sequences_retrieved_from_NCBI_database_using_MEGA_7_software_through_Maximum_Like/16819879

الاتاحة: https://doi.org/10.1371/journal.pone.0258655.s006

View record in BASE

7

Academic Journal

Nucleotide and translated amino acid sequences of M . rosenbergii STAT (MrST).

المؤلفون: Tze Chiew Christie Soo (11570569), Subha Bhassu (416376)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, underlying host mechanisms, silico characterized structures, infection time points, div >< p, differential gene expressions, shrimp aquaculture industry, vibrio parahaemolyticus <, significant differences observed, penaeus monodon <, macrobrachium rosenbergii <, glutamic acid )], vital signalling roles, important sequence conservation, comparative transcriptomic analysis, >< sub xmlns, significant gene expression, shrimp stat gene, associated functional degs, stat gene, shrimp health

Relation: https://figshare.com/articles/journal_contribution/Nucleotide_and_translated_amino_acid_sequences_of_i_M_i_i_rosenbergii_i_STAT_MrST_/16819882

الاتاحة: https://doi.org/10.1371/journal.pone.0258655.s007

View record in BASE

8

Academic Journal

Nucleotide and translated amino acid sequences of P . monodon STAT (PmST).

المؤلفون: Tze Chiew Christie Soo (11570569), Subha Bhassu (416376)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, underlying host mechanisms, silico characterized structures, infection time points, div >< p, differential gene expressions, shrimp aquaculture industry, vibrio parahaemolyticus <, significant differences observed, penaeus monodon <, macrobrachium rosenbergii <, glutamic acid )], vital signalling roles, important sequence conservation, comparative transcriptomic analysis, >< sub xmlns, significant gene expression, shrimp stat gene, associated functional degs, stat gene, shrimp health

Relation: https://figshare.com/articles/journal_contribution/Nucleotide_and_translated_amino_acid_sequences_of_i_P_i_i_monodon_i_STAT_PmST_/16819885

الاتاحة: https://doi.org/10.1371/journal.pone.0258655.s008

View record in BASE

9

Academic Journal

NCBI Conserved Domain Search of M . rosenbergii STAT (MrST) and P . monodon STAT (PmST).

المؤلفون: Tze Chiew Christie Soo (11570569), Subha Bhassu (416376)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, underlying host mechanisms, silico characterized structures, infection time points, div >< p, differential gene expressions, shrimp aquaculture industry, vibrio parahaemolyticus <, significant differences observed, penaeus monodon <, macrobrachium rosenbergii <, glutamic acid )], vital signalling roles, important sequence conservation, comparative transcriptomic analysis, >< sub xmlns, significant gene expression, shrimp stat gene, associated functional degs, stat gene, shrimp health

Relation: https://figshare.com/articles/journal_contribution/NCBI_Conserved_Domain_Search_of_i_M_i_i_rosenbergii_i_STAT_MrST_and_i_P_i_i_monodon_i_STAT_PmST_/16819888

الاتاحة: https://doi.org/10.1371/journal.pone.0258655.s009

View record in BASE

10

Academic Journal

Secondary Structure Prediction of M . rosenbergii STAT (MrST) and P . monodon STAT (PmST) (Cross-bred Disease Tolerant Strain) Protein Sequences using PSIPRED.

المؤلفون: Tze Chiew Christie Soo (11570569), Subha Bhassu (416376)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, underlying host mechanisms, silico characterized structures, infection time points, div >< p, differential gene expressions, shrimp aquaculture industry, vibrio parahaemolyticus <, significant differences observed, penaeus monodon <, macrobrachium rosenbergii <, glutamic acid )], vital signalling roles, important sequence conservation, comparative transcriptomic analysis, >< sub xmlns, significant gene expression, shrimp stat gene, associated functional degs, stat gene, shrimp health

Relation: https://figshare.com/articles/journal_contribution/Secondary_Structure_Prediction_of_i_M_i_i_rosenbergii_i_STAT_MrST_and_i_P_i_i_monodon_i_STAT_PmST_Cross-bred_Disease_Tolerant_Strain_Protein_Sequences_using_PSIPRED_/16819891

الاتاحة: https://doi.org/10.1371/journal.pone.0258655.s010

View record in BASE

11

Academic Journal

Protein Domains, Families, and Functional Sites Prediction of M . rosenbergii STAT (MrST) and P . monodon STAT (PmST) Protein Sequences using PROSITE.

المؤلفون: Tze Chiew Christie Soo (11570569), Subha Bhassu (416376)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, underlying host mechanisms, silico characterized structures, infection time points, div >< p, differential gene expressions, shrimp aquaculture industry, vibrio parahaemolyticus <, significant differences observed, penaeus monodon <, macrobrachium rosenbergii <, glutamic acid )], vital signalling roles, important sequence conservation, comparative transcriptomic analysis, >< sub xmlns, significant gene expression, shrimp stat gene, associated functional degs, stat gene, shrimp health

Relation: https://figshare.com/articles/journal_contribution/Protein_Domains_Families_and_Functional_Sites_Prediction_of_i_M_i_i_rosenbergii_i_STAT_MrST_and_i_P_i_i_monodon_i_STAT_PmST_Protein_Sequences_using_PROSITE_/16819894

الاتاحة: https://doi.org/10.1371/journal.pone.0258655.s011

View record in BASE

12

Academic Journal

3D Protein Structure Prediction of M . rosenbergii STAT (MrST) and P . monodon STAT (PmST) Protein Sequences using SWISS-MODEL.

المؤلفون: Tze Chiew Christie Soo (11570569), Subha Bhassu (416376)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, underlying host mechanisms, silico characterized structures, infection time points, div >< p, differential gene expressions, shrimp aquaculture industry, vibrio parahaemolyticus <, significant differences observed, penaeus monodon <, macrobrachium rosenbergii <, glutamic acid )], vital signalling roles, important sequence conservation, comparative transcriptomic analysis, >< sub xmlns, significant gene expression, shrimp stat gene, associated functional degs, stat gene, shrimp health

Relation: https://figshare.com/articles/journal_contribution/3D_Protein_Structure_Prediction_of_i_M_i_i_rosenbergii_i_STAT_MrST_and_i_P_i_i_monodon_i_STAT_PmST_Protein_Sequences_using_SWISS-MODEL_/16819897

الاتاحة: https://doi.org/10.1371/journal.pone.0258655.s012

View record in BASE

13

Academic Journal

The list of gene, primer pair, and probe sequences used in the qPCR experiments.

المؤلفون: Tze Chiew Christie Soo (11570569), Subha Bhassu (416376)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, underlying host mechanisms, silico characterized structures, infection time points, div >< p, differential gene expressions, shrimp aquaculture industry, vibrio parahaemolyticus <, significant differences observed, penaeus monodon <, macrobrachium rosenbergii <, glutamic acid )], vital signalling roles, important sequence conservation, comparative transcriptomic analysis, >< sub xmlns, significant gene expression, shrimp stat gene, associated functional degs, stat gene, shrimp health

Relation: https://figshare.com/articles/journal_contribution/The_list_of_gene_primer_pair_and_probe_sequences_used_in_the_qPCR_experiments_/16819900

الاتاحة: https://doi.org/10.1371/journal.pone.0258655.s013

View record in BASE

14

Academic Journal

The list of gene and primer pair sequences used in the PCR experiments.

المؤلفون: Tze Chiew Christie Soo (11570569), Subha Bhassu (416376)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, underlying host mechanisms, silico characterized structures, infection time points, div >< p, differential gene expressions, shrimp aquaculture industry, vibrio parahaemolyticus <, significant differences observed, penaeus monodon <, macrobrachium rosenbergii <, glutamic acid )], vital signalling roles, important sequence conservation, comparative transcriptomic analysis, >< sub xmlns, significant gene expression, shrimp stat gene, associated functional degs, stat gene, shrimp health

Relation: https://figshare.com/articles/journal_contribution/The_list_of_gene_and_primer_pair_sequences_used_in_the_PCR_experiments_/16819903

الاتاحة: https://doi.org/10.1371/journal.pone.0258655.s014

View record in BASE

15

Academic Journal

Statistical significance validation of MrST relative gene expression in response to WSSV infection using (A) One-Way ANOVA and (B) Post Hoc Duncan Test.

المؤلفون: Tze Chiew Christie Soo (11570569), Subha Bhassu (416376)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, underlying host mechanisms, silico characterized structures, infection time points, div >< p, differential gene expressions, shrimp aquaculture industry, vibrio parahaemolyticus <, significant differences observed, penaeus monodon <, macrobrachium rosenbergii <, glutamic acid )], vital signalling roles, important sequence conservation, comparative transcriptomic analysis, >< sub xmlns, significant gene expression, shrimp stat gene, associated functional degs, stat gene, shrimp health

Relation: https://figshare.com/articles/journal_contribution/Statistical_significance_validation_of_i_MrST_i_relative_gene_expression_in_response_to_WSSV_infection_using_A_One-Way_ANOVA_and_B_Post_Hoc_Duncan_Test_/16819906

الاتاحة: https://doi.org/10.1371/journal.pone.0258655.s015

View record in BASE

16

Academic Journal

Statistical significance validation of PmST relative gene expression in response to WSSV infection using (A) One-Way ANOVA and (B) Post Hoc Duncan Test.

المؤلفون: Tze Chiew Christie Soo (11570569), Subha Bhassu (416376)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, underlying host mechanisms, silico characterized structures, infection time points, div >< p, differential gene expressions, shrimp aquaculture industry, vibrio parahaemolyticus <, significant differences observed, penaeus monodon <, macrobrachium rosenbergii <, glutamic acid )], vital signalling roles, important sequence conservation, comparative transcriptomic analysis, >< sub xmlns, significant gene expression, shrimp stat gene, associated functional degs, stat gene, shrimp health

Relation: https://figshare.com/articles/journal_contribution/Statistical_significance_validation_of_i_PmST_i_relative_gene_expression_in_response_to_WSSV_infection_using_A_One-Way_ANOVA_and_B_Post_Hoc_Duncan_Test_/16819912

الاتاحة: https://doi.org/10.1371/journal.pone.0258655.s017

View record in BASE

17

Academic Journal

Statistical significance validation of MrST relative gene expression in response to V . parahaemolyticus infection using (A) One-Way ANOVA and (B) Post Hoc Duncan Test.

المؤلفون: Tze Chiew Christie Soo (11570569), Subha Bhassu (416376)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, underlying host mechanisms, silico characterized structures, infection time points, div >< p, differential gene expressions, shrimp aquaculture industry, vibrio parahaemolyticus <, significant differences observed, penaeus monodon <, macrobrachium rosenbergii <, glutamic acid )], vital signalling roles, important sequence conservation, comparative transcriptomic analysis, >< sub xmlns, significant gene expression, shrimp stat gene, associated functional degs, stat gene, shrimp health

Relation: https://figshare.com/articles/journal_contribution/Statistical_significance_validation_of_i_MrST_i_relative_gene_expression_in_response_to_i_V_i_i_parahaemolyticus_i_infection_using_A_One-Way_ANOVA_and_B_Post_Hoc_Duncan_Test_/16819909

الاتاحة: https://doi.org/10.1371/journal.pone.0258655.s016

View record in BASE

18

Academic Journal

Statistical significance validation of PmST relative gene expression in response to Vp AHPND infection using (A) One-Way ANOVA and (B) Post Hoc Duncan Test.

المؤلفون: Tze Chiew Christie Soo (11570569), Subha Bhassu (416376)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, underlying host mechanisms, silico characterized structures, infection time points, div >< p, differential gene expressions, shrimp aquaculture industry, vibrio parahaemolyticus <, significant differences observed, penaeus monodon <, macrobrachium rosenbergii <, glutamic acid )], vital signalling roles, important sequence conservation, comparative transcriptomic analysis, >< sub xmlns, significant gene expression, shrimp stat gene, associated functional degs, stat gene, shrimp health

Relation: https://figshare.com/articles/journal_contribution/Statistical_significance_validation_of_i_PmST_i_relative_gene_expression_in_response_to_i_Vp_i_sub_AHPND_sub_infection_using_A_One-Way_ANOVA_and_B_Post_Hoc_Duncan_Test_/16819915

الاتاحة: https://doi.org/10.1371/journal.pone.0258655.s018

View record in BASE

19

Academic Journal

Detailed comparison of important transcriptomic DEGs identified from WSSV and V . parahaemolyticus / Vp AHPND -infected M . rosenbergii and P . monodon samples.

المؤلفون: Tze Chiew Christie Soo (11570569), Subha Bhassu (416376)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, underlying host mechanisms, silico characterized structures, infection time points, div >< p, differential gene expressions, shrimp aquaculture industry, vibrio parahaemolyticus <, significant differences observed, penaeus monodon <, macrobrachium rosenbergii <, glutamic acid )], vital signalling roles, important sequence conservation, comparative transcriptomic analysis, >< sub xmlns, significant gene expression, shrimp stat gene, associated functional degs, stat gene, shrimp health

Relation: https://figshare.com/articles/journal_contribution/Detailed_comparison_of_important_transcriptomic_DEGs_identified_from_WSSV_and_i_V_i_i_parahaemolyticus_i_i_Vp_i_sub_AHPND_sub_-infected_i_M_i_i_rosenbergii_i_and_i_P_i_i_monodon_i_samples_/16819921

الاتاحة: https://doi.org/10.1371/journal.pone.0258655.s019

View record in BASE

20

Academic Journal

S1 Graphical Abstract -

المؤلفون: Tze Chiew Christie Soo (11570569), Subha Bhassu (416376)

مصطلحات موضوعية: Microbiology, Genetics, Molecular Biology, Evolutionary Biology, Immunology, Inorganic Chemistry, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, underlying host mechanisms, silico characterized structures, infection time points, div >< p, differential gene expressions, shrimp aquaculture industry, vibrio parahaemolyticus <, significant differences observed, penaeus monodon <, macrobrachium rosenbergii <, glutamic acid )], vital signalling roles, important sequence conservation, comparative transcriptomic analysis, >< sub xmlns, significant gene expression, shrimp stat gene, associated functional degs, stat gene, shrimp health

Relation: https://figshare.com/articles/journal_contribution/S1_Graphical_Abstract_-/16819927

الاتاحة: https://doi.org/10.1371/journal.pone.0258655.s021

View record in BASE

تنقيح النتائج