المؤلفون: Samantha N. Piekos (11457947), Sadhana Gaddam (11457950), Pranav Bhardwaj (11457953), Prashanth Radhakrishnan (11457956), Ramanathan V. Guha (11457959), Anthony E. Oro (11457962)

مصطلحات موضوعية: Genetics, Molecular Biology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unknown clinical significance, studied disease genes, single queryable format, requires redundant investment, remain relatively understudied, mice providing validation, diverse applications including, clinical validation studies, specific disease alleles, type 1 diabetes, assess genetic variants, biomedical data commons, t1d ), one, pipeline using b, coding genetic variants, type specific, genetic contributions, biomedical data, biomedical information, bmdc )

Relation: https://figshare.com/articles/figure/Schematic_of_data_workflow_/16648691

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009382.s001

المؤلفون: Samantha N. Piekos (11457947), Sadhana Gaddam (11457950), Pranav Bhardwaj (11457953), Prashanth Radhakrishnan (11457956), Ramanathan V. Guha (11457959), Anthony E. Oro (11457962)

مصطلحات موضوعية: Genetics, Molecular Biology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unknown clinical significance, studied disease genes, single queryable format, requires redundant investment, remain relatively understudied, mice providing validation, diverse applications including, clinical validation studies, specific disease alleles, type 1 diabetes, assess genetic variants, biomedical data commons, t1d ), one, pipeline using b, coding genetic variants, type specific, genetic contributions, biomedical data, biomedical information, bmdc )

Relation: https://figshare.com/articles/figure/SNP_genetic_variants_are_common_and_their_gene_targets_are_associated_with_B-lymphocyte_activity_/16648694

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009382.s002

المؤلفون: Samantha N. Piekos (11457947), Sadhana Gaddam (11457950), Pranav Bhardwaj (11457953), Prashanth Radhakrishnan (11457956), Ramanathan V. Guha (11457959), Anthony E. Oro (11457962)

مصطلحات موضوعية: Genetics, Molecular Biology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unknown clinical significance, studied disease genes, single queryable format, requires redundant investment, remain relatively understudied, mice providing validation, diverse applications including, clinical validation studies, specific disease alleles, type 1 diabetes, assess genetic variants, biomedical data commons, t1d ), one, pipeline using b, coding genetic variants, type specific, genetic contributions, biomedical data, biomedical information, bmdc )

Relation: https://figshare.com/articles/figure/Workflow_schematic_of_applying_the_SNP_Prioritization_Pipeline_to_B-lymphocyte_data_/16648697

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009382.s003

المؤلفون: Samantha N. Piekos (11457947), Sadhana Gaddam (11457950), Pranav Bhardwaj (11457953), Prashanth Radhakrishnan (11457956), Ramanathan V. Guha (11457959), Anthony E. Oro (11457962)

مصطلحات موضوعية: Genetics, Molecular Biology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unknown clinical significance, studied disease genes, single queryable format, requires redundant investment, remain relatively understudied, mice providing validation, diverse applications including, clinical validation studies, specific disease alleles, type 1 diabetes, assess genetic variants, biomedical data commons, t1d ), one, pipeline using b, coding genetic variants, type specific, genetic contributions, biomedical data, biomedical information, bmdc )

Relation: https://figshare.com/articles/figure/SNP_Pipeline_output_with_cohesin_HiChIP_input_is_a_subset_of_the_H3K27ac_HiChIP_output_/16648700

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009382.s004

المؤلفون: Samantha N. Piekos (11457947), Sadhana Gaddam (11457950), Pranav Bhardwaj (11457953), Prashanth Radhakrishnan (11457956), Ramanathan V. Guha (11457959), Anthony E. Oro (11457962)

مصطلحات موضوعية: Genetics, Molecular Biology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unknown clinical significance, studied disease genes, single queryable format, requires redundant investment, remain relatively understudied, mice providing validation, diverse applications including, clinical validation studies, specific disease alleles, type 1 diabetes, assess genetic variants, biomedical data commons, t1d ), one, pipeline using b, coding genetic variants, type specific, genetic contributions, biomedical data, biomedical information, bmdc )

Relation: https://figshare.com/articles/figure/SNP_Prioritization_Pipeline_produces_similar_results_to_the_Sharp_et_al_/16648703

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009382.s005

المؤلفون: Samantha N. Piekos (11457947), Sadhana Gaddam (11457950), Pranav Bhardwaj (11457953), Prashanth Radhakrishnan (11457956), Ramanathan V. Guha (11457959), Anthony E. Oro (11457962)

مصطلحات موضوعية: Genetics, Molecular Biology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unknown clinical significance, studied disease genes, single queryable format, requires redundant investment, remain relatively understudied, mice providing validation, diverse applications including, clinical validation studies, specific disease alleles, type 1 diabetes, assess genetic variants, biomedical data commons, t1d ), one, pipeline using b, coding genetic variants, type specific, genetic contributions, biomedical data, biomedical information, bmdc )

Relation: https://figshare.com/articles/figure/Four_types_of_genetic_variant_gene_regulatory_network_component_structures_/16648706

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009382.s006

المؤلفون: Samantha N. Piekos (11457947), Sadhana Gaddam (11457950), Pranav Bhardwaj (11457953), Prashanth Radhakrishnan (11457956), Ramanathan V. Guha (11457959), Anthony E. Oro (11457962)

مصطلحات موضوعية: Genetics, Molecular Biology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unknown clinical significance, studied disease genes, single queryable format, requires redundant investment, remain relatively understudied, mice providing validation, diverse applications including, clinical validation studies, specific disease alleles, type 1 diabetes, assess genetic variants, biomedical data commons, t1d ), one, pipeline using b, coding genetic variants, type specific, genetic contributions, biomedical data, biomedical information, bmdc )

Relation: https://figshare.com/articles/figure/The_HLA_locus_is_the_top_candidate_region_identified_by_the_SNP_prioritization_pipeline_/16648709

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009382.s007

المؤلفون: Samantha N. Piekos (11457947), Sadhana Gaddam (11457950), Pranav Bhardwaj (11457953), Prashanth Radhakrishnan (11457956), Ramanathan V. Guha (11457959), Anthony E. Oro (11457962)

مصطلحات موضوعية: Genetics, Molecular Biology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unknown clinical significance, studied disease genes, single queryable format, requires redundant investment, remain relatively understudied, mice providing validation, diverse applications including, clinical validation studies, specific disease alleles, type 1 diabetes, assess genetic variants, biomedical data commons, t1d ), one, pipeline using b, coding genetic variants, type specific, genetic contributions, biomedical data, biomedical information, bmdc )

Relation: https://figshare.com/articles/figure/IKZF3_is_a_top_pipeline_identified_candidate_for_T1D-associated_genes_/16648712

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009382.s008

المؤلفون: Samantha N. Piekos (11457947), Sadhana Gaddam (11457950), Pranav Bhardwaj (11457953), Prashanth Radhakrishnan (11457956), Ramanathan V. Guha (11457959), Anthony E. Oro (11457962)

مصطلحات موضوعية: Genetics, Molecular Biology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unknown clinical significance, studied disease genes, single queryable format, requires redundant investment, remain relatively understudied, mice providing validation, diverse applications including, clinical validation studies, specific disease alleles, type 1 diabetes, assess genetic variants, biomedical data commons, t1d ), one, pipeline using b, coding genetic variants, type specific, genetic contributions, biomedical data, biomedical information, bmdc )

Relation: https://figshare.com/articles/figure/IKZF1_identified_as_a_candidate_for_T1D-associated_genes_by_the_pipeline_/16648718

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009382.s009

المؤلفون: Samantha N. Piekos (11457947), Sadhana Gaddam (11457950), Pranav Bhardwaj (11457953), Prashanth Radhakrishnan (11457956), Ramanathan V. Guha (11457959), Anthony E. Oro (11457962)

مصطلحات موضوعية: Genetics, Molecular Biology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unknown clinical significance, studied disease genes, single queryable format, requires redundant investment, remain relatively understudied, mice providing validation, diverse applications including, clinical validation studies, specific disease alleles, type 1 diabetes, assess genetic variants, biomedical data commons, t1d ), one, pipeline using b, coding genetic variants, type specific, genetic contributions, biomedical data, biomedical information, bmdc )

Relation: https://figshare.com/articles/dataset/Main_Biomedical_Data_Commons_entity_types_/16648721

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009382.s010

المؤلفون: Samantha N. Piekos (11457947), Sadhana Gaddam (11457950), Pranav Bhardwaj (11457953), Prashanth Radhakrishnan (11457956), Ramanathan V. Guha (11457959), Anthony E. Oro (11457962)

مصطلحات موضوعية: Genetics, Molecular Biology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unknown clinical significance, studied disease genes, single queryable format, requires redundant investment, remain relatively understudied, mice providing validation, diverse applications including, clinical validation studies, specific disease alleles, type 1 diabetes, assess genetic variants, biomedical data commons, t1d ), one, pipeline using b, coding genetic variants, type specific, genetic contributions, biomedical data, biomedical information, bmdc )

Relation: https://figshare.com/articles/dataset/Main_Biomedical_Data_Commons_edges_/16648724

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009382.s011

المؤلفون: Samantha N. Piekos (11457947), Sadhana Gaddam (11457950), Pranav Bhardwaj (11457953), Prashanth Radhakrishnan (11457956), Ramanathan V. Guha (11457959), Anthony E. Oro (11457962)

مصطلحات موضوعية: Genetics, Molecular Biology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unknown clinical significance, studied disease genes, single queryable format, requires redundant investment, remain relatively understudied, mice providing validation, diverse applications including, clinical validation studies, specific disease alleles, type 1 diabetes, assess genetic variants, biomedical data commons, t1d ), one, pipeline using b, coding genetic variants, type specific, genetic contributions, biomedical data, biomedical information, bmdc )

Relation: https://figshare.com/articles/dataset/Ranked_list_of_genetic_variant_and_genes_ordered_by_closeness_centrality_score_calculated_from_their_gene_regulatory_networks_for_GM12878_cells_with_H3K27ac_HiChIP_connectome_data_/16648727

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009382.s012

المؤلفون: Samantha N. Piekos (11457947), Sadhana Gaddam (11457950), Pranav Bhardwaj (11457953), Prashanth Radhakrishnan (11457956), Ramanathan V. Guha (11457959), Anthony E. Oro (11457962)

مصطلحات موضوعية: Genetics, Molecular Biology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unknown clinical significance, studied disease genes, single queryable format, requires redundant investment, remain relatively understudied, mice providing validation, diverse applications including, clinical validation studies, specific disease alleles, type 1 diabetes, assess genetic variants, biomedical data commons, t1d ), one, pipeline using b, coding genetic variants, type specific, genetic contributions, biomedical data, biomedical information, bmdc )

Relation: https://figshare.com/articles/dataset/Genetic_variants_in_close_proximity_to_HLA-DQB1_or_HLA-DRB1_/16648730

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009382.s013

المؤلفون: Samantha N. Piekos (11457947), Sadhana Gaddam (11457950), Pranav Bhardwaj (11457953), Prashanth Radhakrishnan (11457956), Ramanathan V. Guha (11457959), Anthony E. Oro (11457962)

مصطلحات موضوعية: Genetics, Molecular Biology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unknown clinical significance, studied disease genes, single queryable format, requires redundant investment, remain relatively understudied, mice providing validation, diverse applications including, clinical validation studies, specific disease alleles, type 1 diabetes, assess genetic variants, biomedical data commons, t1d ), one, pipeline using b, coding genetic variants, type specific, genetic contributions, biomedical data, biomedical information, bmdc )

Relation: https://figshare.com/articles/dataset/The_entities_along_with_their_subclass_and_description_that_are_uniquely_defined_by_Biomedical_Data_Commons_schema_to_represent_the_data_in_the_knowledge_graph_/16648736

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009382.s015

المؤلفون: Samantha N. Piekos (11457947), Sadhana Gaddam (11457950), Pranav Bhardwaj (11457953), Prashanth Radhakrishnan (11457956), Ramanathan V. Guha (11457959), Anthony E. Oro (11457962)

مصطلحات موضوعية: Genetics, Molecular Biology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unknown clinical significance, studied disease genes, single queryable format, requires redundant investment, remain relatively understudied, mice providing validation, diverse applications including, clinical validation studies, specific disease alleles, type 1 diabetes, assess genetic variants, biomedical data commons, t1d ), one, pipeline using b, coding genetic variants, type specific, genetic contributions, biomedical data, biomedical information, bmdc )

Relation: https://figshare.com/articles/dataset/ENCODE_ChIP-seq_datasets_GEO_accession_numbers_/16648733

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009382.s014

المؤلفون: Samantha N. Piekos (11457947), Sadhana Gaddam (11457950), Pranav Bhardwaj (11457953), Prashanth Radhakrishnan (11457956), Ramanathan V. Guha (11457959), Anthony E. Oro (11457962)

مصطلحات موضوعية: Genetics, Molecular Biology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unknown clinical significance, studied disease genes, single queryable format, requires redundant investment, remain relatively understudied, mice providing validation, diverse applications including, clinical validation studies, specific disease alleles, type 1 diabetes, assess genetic variants, biomedical data commons, t1d ), one, pipeline using b, coding genetic variants, type specific, genetic contributions, biomedical data, biomedical information, bmdc )

Relation: https://figshare.com/articles/dataset/The_properties_along_with_their_domain_range_and_description_that_are_uniquely_defined_by_Biomedical_Data_Commons_schema_to_represent_the_data_in_the_knowledge_graph_/16648739

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009382.s016

المؤلفون: Samantha N. Piekos (11457947), Sadhana Gaddam (11457950), Pranav Bhardwaj (11457953), Prashanth Radhakrishnan (11457956), Ramanathan V. Guha (11457959), Anthony E. Oro (11457962)

مصطلحات موضوعية: Genetics, Molecular Biology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unknown clinical significance, studied disease genes, single queryable format, requires redundant investment, remain relatively understudied, mice providing validation, diverse applications including, clinical validation studies, specific disease alleles, type 1 diabetes, assess genetic variants, biomedical data commons, t1d ), one, pipeline using b, coding genetic variants, type specific, genetic contributions, biomedical data, biomedical information, bmdc )

Relation: https://figshare.com/articles/dataset/The_enumeration_subclass_along_with_their_description_and_their_subclass_types_of_plus_associated_descriptions_that_are_uniquely_defined_by_Biomedical_Data_Commons_schema_to_represent_the_data_in_the_knowledge_graph_/16648742

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009382.s017

المؤلفون: Samantha N. Piekos (11457947), Sadhana Gaddam (11457950), Pranav Bhardwaj (11457953), Prashanth Radhakrishnan (11457956), Ramanathan V. Guha (11457959), Anthony E. Oro (11457962)

مصطلحات موضوعية: Genetics, Molecular Biology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unknown clinical significance, studied disease genes, single queryable format, requires redundant investment, remain relatively understudied, mice providing validation, diverse applications including, clinical validation studies, specific disease alleles, type 1 diabetes, assess genetic variants, biomedical data commons, t1d ), one, pipeline using b, coding genetic variants, type specific, genetic contributions, biomedical data, biomedical information, bmdc )

Relation: https://figshare.com/articles/figure/Biomedical_Data_Commons_is_a_knowledge_graph_that_integrates_multiple_data_types_/16648745

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009382.g001

المؤلفون: Samantha N. Piekos (11457947), Sadhana Gaddam (11457950), Pranav Bhardwaj (11457953), Prashanth Radhakrishnan (11457956), Ramanathan V. Guha (11457959), Anthony E. Oro (11457962)

مصطلحات موضوعية: Genetics, Molecular Biology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unknown clinical significance, studied disease genes, single queryable format, requires redundant investment, remain relatively understudied, mice providing validation, diverse applications including, clinical validation studies, specific disease alleles, type 1 diabetes, assess genetic variants, biomedical data commons, t1d ), one, pipeline using b, coding genetic variants, type specific, genetic contributions, biomedical data, biomedical information, bmdc )

Relation: https://figshare.com/articles/figure/Schematic_of_the_SNP_Prioritization_Pipeline_/16648748

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009382.g002

المؤلفون: Samantha N. Piekos (11457947), Sadhana Gaddam (11457950), Pranav Bhardwaj (11457953), Prashanth Radhakrishnan (11457956), Ramanathan V. Guha (11457959), Anthony E. Oro (11457962)

مصطلحات موضوعية: Genetics, Molecular Biology, Developmental Biology, Cancer, Science Policy, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, unknown clinical significance, studied disease genes, single queryable format, requires redundant investment, remain relatively understudied, mice providing validation, diverse applications including, clinical validation studies, specific disease alleles, type 1 diabetes, assess genetic variants, biomedical data commons, t1d ), one, pipeline using b, coding genetic variants, type specific, genetic contributions, biomedical data, biomedical information, bmdc )

Relation: https://figshare.com/articles/figure/Pipeline_prioritizes_common_non-coding_genetic_variants_that_are_cell_type_specific_/16648751

الاتاحة: https://doi.org/10.1371/journal.pcbi.1009382.g003