المؤلفون: J. Ouyang, Y. Gao, Y. Yang

المصدر: BMC Bioinformatics, Vol 25, Iss 1, Pp 1-21 (2024)

مصطلحات موضوعية: Protein contact prediction, Single-sequence-based, Graph neural network, Convolutional neural network, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1471-2105

URL الوصول: https://doaj.org/article/d74f8d889e004f7fa76791ed77886725

المؤلفون: Yehorova, Dariia, Crean, Rory M., Kasson, Peter M., Kamerlin, Shina C. L., 1981

المصدر: Protein Science. 33(3)

مصطلحات موضوعية: protein interaction networks, class A beta-lactamases, protein contact analysis, protein engineering

وصف الملف: electronic

URL الوصول: https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-524605
https://doi.org/10.1002/pro.4911
https://uu.diva-portal.org/smash/get/diva2:1844042/FULLTEXT01.pdf

المؤلفون: Giménez-Arnau, Ana M, Pesqué, David, Maibach, Howard I

المصدر: Current Dermatology Reports. 11(4)

مصطلحات موضوعية: Biomedical and Clinical Sciences, Clinical Sciences, Rare Diseases, Contact urticarial, Immediate, Protein contact dermatitis, Occupational, Dermatitis, Angioedema, Inducible urticarial

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/3gw8q0zd

المؤلفون: Yunda Si, Chengfei Yan

المصدر: eLife, Vol 12 (2024)

مصطلحات موضوعية: protein–protein interaction, inter-protein contact prediction, protein complex structure prediction, protein language models, geometric deep learning, protein–protein docking, Medicine, Science, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://elifesciences.org/articles/92184; https://doaj.org/toc/2050-084X

URL الوصول: https://doaj.org/article/20faab102b134ac0a45c5b858a91fa76

المؤلفون: Erba Fulvio, Di Paola Luisa, Di Venere Almerinda, Mastrangelo Eloise, Cossu Federica, Mei Giampiero, Minicozzi Velia

المصدر: Biomolecular Concepts, Vol 14, Iss 1, Pp 105-53 (2023)

مصطلحات موضوعية: molecular dynamics, quaternary interaction, trafs, protein contact networks, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1868-503X

URL الوصول: https://doaj.org/article/404fe9b9284f48bb990a644098ea3431

المؤلفون: Mohammad Madani, Mohammad Mahdi Behzadi, Dongjin Song, Horea T. Ilies, Anna Tarakanova

المصدر: Computational and Structural Biotechnology Journal, Vol 20, Iss , Pp 6138-6148 (2022)

مصطلحات موضوعية: Protein contact map, MSA, GAN, CGAN-Cmap, CASP, SE-Concat, Biotechnology, TP248.13-248.65

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2001037022005141; https://doaj.org/toc/2001-0370

URL الوصول: https://doaj.org/article/106cd223062e4be58fd698a3a9045389

المؤلفون: Xing Zhang, Hongmei Yin, Fei Ling, Jian Zhan, Yaoqi Zhou

مصطلحات موضوعية: Biochemistry, Physiology, Biotechnology, Evolutionary Biology, Biological Sciences not elsewhere classified, low complexity regions, convolutional neural networks, hallucinated &# 8221, auxiliary edge updates, graph neural networks, protein contact maps, based graph construction, edge information, contact map, &# 8220, protein structures, cgnn based, significant improvement, sequences designed, sequence recovery, selective kernels, results suggest, network performance, native sequences, layer perceptrons, hydrophobic positions, early use, diffusion models, deep learning, current state

Relation: https://figshare.com/articles/journal_contribution/Impact_of_the_use_of_selective_kernels_in_node_update_and_edge_update_according_to_perplexity_and_median_sequence_recovery_for_two_test_datasets_CATH4_2-StructNR193_and_PDB-StructNR156_/24768036

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011330.s011
https://figshare.com/articles/journal_contribution/Impact_of_the_use_of_selective_kernels_in_node_update_and_edge_update_according_to_perplexity_and_median_sequence_recovery_for_two_test_datasets_CATH4_2-StructNR193_and_PDB-StructNR156_/24768036

المؤلفون: Xing Zhang, Hongmei Yin, Fei Ling, Jian Zhan, Yaoqi Zhou

مصطلحات موضوعية: Biochemistry, Physiology, Biotechnology, Evolutionary Biology, Biological Sciences not elsewhere classified, low complexity regions, convolutional neural networks, hallucinated &# 8221, auxiliary edge updates, graph neural networks, protein contact maps, based graph construction, edge information, contact map, &# 8220, protein structures, cgnn based, significant improvement, sequences designed, sequence recovery, selective kernels, results suggest, network performance, native sequences, layer perceptrons, hydrophobic positions, early use, diffusion models, deep learning, current state

Relation: https://figshare.com/articles/journal_contribution/Statistical_significance_between_a_given_method_to_SPIN-CGNN_for_the_structural_difference_between_target_structures_and_AlphaFold2-predicted_structures_for_designed_sequences_according_to_Root_Mean_Square_Deviation_RMSD_Global_Distance_Tes/24768045

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011330.s014
https://figshare.com/articles/journal_contribution/Statistical_significance_between_a_given_method_to_SPIN-CGNN_for_the_structural_difference_between_target_structures_and_AlphaFold2-predicted_structures_for_designed_sequences_according_to_Root_Mean_Square_Deviation_RMSD_Global_Distance_Tes/24768045

المؤلفون: Xing Zhang, Hongmei Yin, Fei Ling, Jian Zhan, Yaoqi Zhou

مصطلحات موضوعية: Biochemistry, Physiology, Biotechnology, Evolutionary Biology, Biological Sciences not elsewhere classified, low complexity regions, convolutional neural networks, hallucinated &# 8221, auxiliary edge updates, graph neural networks, protein contact maps, based graph construction, edge information, contact map, &# 8220, protein structures, cgnn based, significant improvement, sequences designed, sequence recovery, selective kernels, results suggest, network performance, native sequences, layer perceptrons, hydrophobic positions, early use, diffusion models, deep learning, current state

Relation: https://figshare.com/articles/journal_contribution/Refoldability_tested_by_AlphaFold2_with_PDB_templates_/24768039

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011330.s012
https://figshare.com/articles/journal_contribution/Refoldability_tested_by_AlphaFold2_with_PDB_templates_/24768039

المؤلفون: Xing Zhang, Hongmei Yin, Fei Ling, Jian Zhan, Yaoqi Zhou

مصطلحات موضوعية: Biochemistry, Physiology, Biotechnology, Evolutionary Biology, Biological Sciences not elsewhere classified, low complexity regions, convolutional neural networks, hallucinated &# 8221, auxiliary edge updates, graph neural networks, protein contact maps, based graph construction, edge information, contact map, &# 8220, protein structures, cgnn based, significant improvement, sequences designed, sequence recovery, selective kernels, results suggest, network performance, native sequences, layer perceptrons, hydrophobic positions, early use, diffusion models, deep learning, current state

Relation: https://figshare.com/articles/journal_contribution/Adding_Gaussian_noises_to_the_structural_coordinates_slightly_improved_the_performance_of_deep-learning_methods_SPIN-CGNN_ProteinMPNN_and_PiFold_on_the_Hallucination129_test_set_according_to_the_fraction_of_Low-Complexity_Regions_LCR_and_th/24768042

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011330.s013
https://figshare.com/articles/journal_contribution/Adding_Gaussian_noises_to_the_structural_coordinates_slightly_improved_the_performance_of_deep-learning_methods_SPIN-CGNN_ProteinMPNN_and_PiFold_on_the_Hallucination129_test_set_according_to_the_fraction_of_Low-Complexity_Regions_LCR_and_th/24768042

المؤلفون: Santiesteban Toca, Cosme E., Asencio Cortés, Gualberto, Márquez Chamorro, Alfonso Eduardo, Aguilar Ruiz, Jesús Salvador

المساهمون: Universidad de Sevilla. Departamento de Lenguajes y Sistemas Informáticos, Universidad de Sevilla. TIC205: Ingeniería del Software Aplicada

مصطلحات موضوعية: Protein structure prediction, Protein contact map prediction, Short-range interactions, Decision trees

Relation: EvoBIO 2012: 10th European Conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics (2012), pp. 224-233.; https://link.springer.com/chapter/10.1007/978-3-642-29066-4_20; Berlin, Germany; https://idus.us.es/handle//11441/133535

الاتاحة: https://idus.us.es/handle//11441/133535

المؤلفون: Santiesteban Toca, Cosme E., Márquez Chamorro, Alfonso Eduardo, Asencio Cortés, Gualberto, Aguilar Ruiz, Jesús Salvador

المساهمون: Universidad de Sevilla. Departamento de Lenguajes y Sistemas Informáticos

مصطلحات موضوعية: Protein structure prediction, Protein contact map prediction, Decision trees

Relation: EvoBIO 2011: 9th European Conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics (2011), pp. 153-158.; https://link.springer.com/chapter/10.1007/978-3-642-20389-3_16; Berlin, Germany; https://idus.us.es/handle//11441/133463

الاتاحة: https://idus.us.es/handle//11441/133463

المؤلفون: Christos T. Chasapis, Alexios Vlamis-Gardikas

المصدر: Biophysica, Vol 1, Iss 2, Pp 157-167 (2021)

مصطلحات موضوعية: protein contact network, closeness centrality, graph theory, conformational dynamics, NMR spin relaxation, MDs, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://www.mdpi.com/2673-4125/1/2/12; https://doaj.org/toc/2673-4125

URL الوصول: https://doaj.org/article/68f8a81d711f4c6992c767e22196ff79

المؤلفون: Suwimon Pootongkam, Sonia A. Havele, Hanna Orillaza, Eli Silver, Douglas Y. Rowland, Susan T. Nedorost

المصدر: Immunity, Inflammation and Disease, Vol 8, Iss 1, Pp 24-29 (2020)

مصطلحات موضوعية: atopic dermatitis, atopy patch tests, elimination diets, protein contact dermatitis, systemic contact dermatitis, Immunologic diseases. Allergy, RC581-607

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2050-4527

URL الوصول: https://doaj.org/article/105c3c1d075b4d4384a8ffa2162b06c5

المؤلفون: Márquez Chamorro, Alfonso Eduardo, Asencio Cortés, Gualberto, Santiesteban Toca, Cosme E., Aguilar Ruiz, Jesús Salvador

المساهمون: Universidad de Sevilla. Departamento de Lenguajes y Sistemas Informáticos, Universidad de Sevilla. TIC205: Ingeniería del Software Aplicada, Junta de Andalucía, Ministerio de Educación y Ciencia (MEC). España

مصطلحات موضوعية: Protein structure prediction, Soft computing, Protein contact map, Support vector machines, Neural networks, Evolutionary algorithms

Relation: Applied Soft Computing, 35 (October 2015), 398-410.; P07-TIC-02611; TIN2011-28956-C02-01; https://www.sciencedirect.com/science/article/pii/S1568494615003737?via%3Dihub; https://idus.us.es/handle//11441/133555

الاتاحة: https://idus.us.es/handle//11441/133555

المؤلفون: Drago, Valentina, Di Paola, Luisa, Lesieur, Claire, Bernardini, Renato, Bucolo, Claudio, Platania, Chiara Bianca Maria

المساهمون: Università degli studi di Catania = University of Catania (Unict), Università Campus Bio-Medico di Roma / University Campus Bio-Medico of Rome ( UCBM), Ampère, Département Bioingénierie (BioIng), Ampère (AMPERE), École Centrale de Lyon (ECL), Université de Lyon-Université de Lyon-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-École Centrale de Lyon (ECL), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)

المصدر: ISSN: 2076-3417.

مصطلحات موضوعية: hemophilia A, FVIII, von Willebrand Factor, protein contact networks, bioinformatics, biologic drugs, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM], [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]

Relation: hal-03814955; https://hal.science/hal-03814955; https://hal.science/hal-03814955/document; https://hal.science/hal-03814955/file/applsci-12-07855-v2%281%29.pdf

الاتاحة: https://hal.science/hal-03814955
https://hal.science/hal-03814955/document
https://hal.science/hal-03814955/file/applsci-12-07855-v2%281%29.pdf
https://doi.org/10.3390/app12157855

المؤلفون: Pesqué, David, Canal Garcia, Elena, Rozas-Muñoz, Eduardo, Pujol Vallverdú, Ramón M., Giménez Arnau, Ana M.

مصطلحات موضوعية: Case report, Mango, Patch test, Protein contact dermatitis

Relation: Versió postprint del document publicat a: https://doi.org/10.1111/cod.13758; Cotact Dermatitis, 2021, vol. 84, núm. 6, p. 457-458; http://hdl.handle.net/10459.1/83226; https://doi.org/10.1111/cod.13758

الاتاحة: http://hdl.handle.net/10459.1/83226
https://doi.org/10.1111/cod.13758

المؤلفون: Luisa Di Paola, Humanath Poudel, Mauro Parise, Alessandro Giuliani, David M. Leitner

المصدر: Entropy; Volume 24; Issue 7; Pages: 998

مصطلحات موضوعية: GPCRs, β2 adrenergic receptor, allosteric switch, Protein Contact Networks, dynamical cross-correlation matrix, Multivariate Statistical Analysis

وصف الملف: application/pdf

Relation: Entropy and Biology; https://dx.doi.org/10.3390/e24070998

الاتاحة: https://doi.org/10.3390/e24070998

المؤلفون: Broto Chakrabarty, Nita Parekh

المصدر: Molecules; Volume 27; Issue 2; Pages: 423

مصطلحات موضوعية: ankyrin repeats, human ankyrins, protein contact network, ankyrin conserved residues, ankyrin repeat domain

جغرافية الموضوع: agris

وصف الملف: application/pdf

Relation: Macromolecular Chemistry; https://dx.doi.org/10.3390/molecules27020423

الاتاحة: https://doi.org/10.3390/molecules27020423

المؤلفون: Hang Yang, Minghui Wang, Zhenhua Yu, Xing-Ming Zhao, Ao Li

المصدر: IEEE Access, Vol 8, Pp 80899-80907 (2020)

مصطلحات موضوعية: Protein contact map prediction, deep learning, generative adversarial network, adversarial learning, Electrical engineering. Electronics. Nuclear engineering, TK1-9971

وصف الملف: electronic resource

Relation: https://ieeexplore.ieee.org/document/9082609/; https://doaj.org/toc/2169-3536

URL الوصول: https://doaj.org/article/20aa79e1a9ad418fbcf6cdf4c1879378