المؤلفون: Guilherme Miura Lavezzo, Marcelo de Souza Lauretto, Luiz Paulo Moura Andrioli, Ariane Machado-Lima

المصدر: Genetics and Molecular Biology, Vol 46, Iss 4 (2024)

مصطلحات موضوعية: Transcription factor binding site, position weight matrix, ChIP-seq, position dependency, model comparison, Genetics, QH426-470

وصف الملف: electronic resource

Relation: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572023000700802&tlng=en; https://doaj.org/toc/1678-4685

URL الوصول: https://doaj.org/article/ef02c2ab757b418ab2cfc1ff13d7616a

المؤلفون: Valentina Rudenko, Eugene Korotkov

المصدر: International Journal of Molecular Sciences, Vol 25, Iss 8, p 4441 (2024)

مصطلحات موضوعية: dispersed repeats, transposable elements, repeated DNA, Cyanidioschyzon merolae, alignment algorithm, position weight matrix, Biology (General), QH301-705.5, Chemistry, QD1-999

Relation: https://www.mdpi.com/1422-0067/25/8/4441; https://doaj.org/toc/1661-6596; https://doaj.org/toc/1422-0067; https://doaj.org/article/8021cf584b9e482a98db84bcb8803863

الاتاحة: https://doi.org/10.3390/ijms25084441
https://doaj.org/article/8021cf584b9e482a98db84bcb8803863

المؤلفون: Koichi Miyamoto, Naoki Yamamoto, Yasubumi Sakakibara

المصدر: IEEE Transactions on Quantum Engineering, Vol 4, Pp 1-14 (2023)

مصطلحات موضوعية: Bioinformatics, position weight matrix (PWM) matching, quantum algorithm, quantum amplitude amplification (QAA), quantum Monte Carlo integration (QMCI), Atomic physics. Constitution and properties of matter, QC170-197, Materials of engineering and construction. Mechanics of materials, TA401-492

وصف الملف: electronic resource

Relation: https://ieeexplore.ieee.org/document/10177237/; https://doaj.org/toc/2689-1808

URL الوصول: https://doaj.org/article/ad4b6cda8f2c49149e237d683d382396

المؤلفون: Mille, Marie, Ripoll, Julie, Cazaux, Bastien, Rivals, Eric

المساهمون: Méthodes et Algorithmes pour la Bioinformatique (LIRMM, Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier (LIRMM), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), Institut de Biologie Computationnelle (IBC), Institut National de Recherche en Informatique et en Automatique (Inria)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Université de Montpellier (UM), Projet Translatol financement INCA, ANR-10-LABX-0020,NUMEV,Digital and Hardware Solutions and Modeling for the Environement and Life Sciences(2010), European Project: 956229,H2020-EU.1.3. - EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions,ALPACA(2021)

المصدر: ISSN: 1367-4803.

مصطلحات موضوعية: Motif, Binding site, Position Weight Matrix, Pattern, Matching, Algorithm, Python, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]

Relation: info:eu-repo/grantAgreement//956229/EU/ALgorithms for PAngenome Computational Analysis/ALPACA

الاتاحة: https://hal-lirmm.ccsd.cnrs.fr/lirmm-03834008
https://hal-lirmm.ccsd.cnrs.fr/lirmm-03834008v1/document
https://hal-lirmm.ccsd.cnrs.fr/lirmm-03834008v1/file/btad141.pdf
https://doi.org/10.1093/bioinformatics/btad141

المؤلفون: Ma, Xiaoyan

المساهمون: Adryan, Boris

مصطلحات موضوعية: 572.8, transcription factor, Hi-C contact map, chromatin organisation, Position Weight Matrix

URL الوصول: https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.744314

المؤلفون: Jan Fostier

المصدر: BMC Bioinformatics, Vol 21, Iss S2, Pp 1-13 (2020)

مصطلحات موضوعية: Position weight matrix (PWM), High performance computing (HPC), Basic linear algebra subprograms (BLAS), Graphics processing units (GPUs), Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s12859-020-3348-6; https://doaj.org/toc/1471-2105

URL الوصول: https://doaj.org/article/75eedc7fcddc4ad88dd5a15791b7f380

المؤلفون: Sarwan Ali, Babatunde Bello, Prakash Chourasia, Ria Thazhe Punathil, Yijing Zhou, Murray Patterson

المصدر: Biology; Volume 11; Issue 3; Pages: 418

مصطلحات موضوعية: coronavirus, host specification, COVID-19, k -mers, position weight matrix, classification, clustering

جغرافية الموضوع: agris

وصف الملف: application/pdf

Relation: Bioinformatics; https://dx.doi.org/10.3390/biology11030418

الاتاحة: https://doi.org/10.3390/biology11030418

المؤلفون: Yutong Jin, Jiahui Jiang, Ruixuan Wang, Zhaohui S. Qin

المصدر: Frontiers in Genetics, Vol 12 (2021)

مصطلحات موضوعية: non-coding variant annotation, transcription regulation, transcription factor binding motif, gapped k-mer SVM classifier, genome-wide association study, position weight matrix, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2021.667866/full; https://doaj.org/toc/1664-8021

URL الوصول: https://doaj.org/article/ba35bf8c11934f42bf4168e711a322b3

المؤلفون: Hai-Cheng Yi, Zhu-Hong You, Mei-Neng Wang, Zhen-Hao Guo, Yan-Bin Wang, Ji-Ren Zhou

المصدر: BMC Bioinformatics, Vol 21, Iss 1, Pp 1-10 (2020)

مصطلحات موضوعية: Sequence analysis, RNA-protein interaction, ncRNA, Ensemble learning, Position weight matrix, Legendre moments, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s12859-020-3406-0; https://doaj.org/toc/1471-2105

URL الوصول: https://doaj.org/article/6ba9565350ad46c79d09e77e0b26437e

المؤلفون: Thapa, Niraj, Chaudhari, Meenal, Iannetta, Anthony A., White, Clarence, Kaushik, Roy, Newman, Robert H., Hicks, Leslie M., KC, Dukka B.

مصطلحات موضوعية: Protein phosphorylation, Protein processing, Position weight matrix, Pulse time modulation

وصف الملف: application/pdf

Relation: Scientific Reports;11; Thapa, N., Chaudhari, M., Iannetta, A.A. et al. A deep learning based approach for prediction of Chlamydomonas reinhardtii phosphorylation sites. Sci Rep 11, 12550 (2021). https://doi.org/10.1038/s41598-021-91840-w; https://doi.org/10.1038/s41598-021-91840-w; https://soar.wichita.edu/handle/10057/21632

الاتاحة: https://doi.org/10.1038/s41598-021-91840-w
https://soar.wichita.edu/handle/10057/21632

المؤلفون: Xuhua Xia

المصدر: Genes; Volume 12; Issue 11; Pages: 1809

مصطلحات موضوعية: sequence alignment, automation, sum-of-pairs score, inconsistency, position weight matrix, PWM, codon-based alignment, phylogenetics

جغرافية الموضوع: agris

وصف الملف: application/pdf

Relation: Technologies and Resources for Genetics; https://dx.doi.org/10.3390/genes12111809

الاتاحة: https://doi.org/10.3390/genes12111809

المؤلفون: Xiuzhen Hu, Zhenxing Feng, Xiaojin Zhang, Liu Liu, Shan Wang

المصدر: Frontiers in Genetics, Vol 11 (2020)

مصطلحات موضوعية: metal ion ligand, binding residues, relative solvent accessibility, secondary structure, position weight matrix, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fgene.2020.00214/full; https://doaj.org/toc/1664-8021

URL الوصول: https://doaj.org/article/59f16ec7cdd649f983dc60a82a58ac36

المؤلفون: Florian, Geier

المساهمون: Springer Nature (Germany)

مصطلحات موضوعية: Kinase activity, Phosphoproteomics, Position weight matrix, Bioconductor, ExperimentHub package

Relation: https://doi.org/10.1038/s41586-024-07407-y; https://zenodo.org/communities/bioconductor; https://doi.org/10.5281/zenodo.13768762; https://doi.org/10.5281/zenodo.13831966; oai:zenodo.org:13831966

الاتاحة: https://doi.org/10.5281/zenodo.13831966

المؤلفون: Geier, Florian

المساهمون: Springer Nature (Germany)

مصطلحات موضوعية: Kinase activity, Position weight matrix, Phosphoproteomics, Bioconductor, ExperimentHub package

Relation: https://doi.org/10.1038/s41586-022-05575-3; https://zenodo.org/communities/bioconductor; https://doi.org/10.5281/zenodo.10628873; https://doi.org/10.5281/zenodo.10628874; oai:zenodo.org:10628874

الاتاحة: https://doi.org/10.5281/zenodo.10628874

المؤلفون: Shuxiang Ruan, Gary D. Stormo

المصدر: BMC Bioinformatics, Vol 19, Iss 1, Pp 1-8 (2018)

مصطلحات موضوعية: Motif, Motif optimization, ChIP-seq, Position weight matrix, DNA shape features, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s12859-018-2104-7; https://doaj.org/toc/1471-2105

URL الوصول: https://doaj.org/article/076efbb6c85043c6b444b1916e09a6cf

المؤلفون: Li, Hao, Rhodius, Virgil, Gross, Carol, Siggia, Eric D.

المصدر: Proceedings of the National Academy of Sciences of the United States of America, 2002 Sep 01. 99(18), 11772-11777.

URL الوصول: https://www.jstor.org/stable/3073114

المؤلفون: Zhen Gao, Lu Liu, Jianhua Ruan

المصدر: BMC Genomics, Vol 18, Iss S6, Pp 47-54 (2017)

مصطلحات موضوعية: Sequence logo, Position weight matrix, Convert, Motif finding, Transcription, Binding site, Biotechnology, TP248.13-248.65, Genetics, QH426-470

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-017-4023-9; https://doaj.org/toc/1471-2164

URL الوصول: https://doaj.org/article/ea5eec54a9b14e86819c4ce9c74744af

المؤلفون: Ying Cui, Zelong Xu, Jianzhong Li

المصدر: Genes, Vol 10, Iss 10, p 765 (2019)

مصطلحات موضوعية: nucleosome positioning, z-curve, position weight matrix, support vector machine, Genetics, QH426-470

Relation: https://www.mdpi.com/2073-4425/10/10/765; https://doaj.org/toc/2073-4425; https://doaj.org/article/48ac106e2bb740f2ab946eac9232a087

الاتاحة: https://doi.org/10.3390/genes10100765
https://doaj.org/article/48ac106e2bb740f2ab946eac9232a087

المؤلفون: Ning Zhang, R. S. P. Rao, Fernanda Salvato, Jesper F. Havelund, Ian M. Møller, Jay J. Thelen, Dong Xu

المصدر: Frontiers in Plant Science, Vol 9 (2018)

مصطلحات موضوعية: machine learning, mitochondrial targeting, deep neural network, support vector machine, position weight matrix, gene co-expression, Plant culture, SB1-1110

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fpls.2018.00634/full; https://doaj.org/toc/1664-462X

URL الوصول: https://doaj.org/article/8f313f47b72e407aba05019634a1da20

المؤلفون: Dieter Jahn, Christian-Alexander Dudek

المصدر: Nucleic Acids Research
Nucleic acids research, gkab1110, https://doi.org/10.1093/nar/gkab1110--Nucleic Acids Res--Nucleic acids symposium series--Nucleic Acids Symp. Ser.--http://www.bibliothek.uni-regensburg.de/ezeit/?2205588--https://academic.oup.com/nass/issue--https://academic.oup.com/nass/issue--1362-4962--1362-4962

مصطلحات موضوعية: Transcription, Genetic, AcademicSubjects/SCI00010, Datasets as Topic, Genome browser, Biology, computer.software_genre, Article, User-Computer Interface, Bacterial transcription, Factor (programming language), Databases, Genetic, Genetics, Database Issue, Veröffentlichung der TU Braunschweig, Transcription factor, ddc:5, computer.programming_language, Internet, Binding Sites, Genome, Bacteria, Database, Gene Expression Regulation, Bacterial, Position weight matrix, Archaea, Visualization, DNA binding site, ddc:57, Prokaryotic Cells, Publikationsfonds der TU Braunschweig, Gene Expression Regulation, Archaeal, User interface, computer, Transcription Factors

وصف الملف: 8 Seiten

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::eb780842901a9553d4ee5f5515ad15cf
https://doi.org/10.1093/nar/gkab1110