المؤلفون: Robert L. Hanson, Elaine Lazalde, Radim Knob, David H. Harris, Yesman Akuoko, Jacob B. Nielsen, Adam T. Woolley

المصدر: Talanta Open, Vol 3, Iss , Pp 100034- (2021)

مصطلحات موضوعية: DNA hybridization, Sequence-specific hybridization, Multilabel fluorescence, Drug resistance, Plasmid detection, Analytical chemistry, QD71-142

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2666831921000047; https://doaj.org/toc/2666-8319

URL الوصول: https://doaj.org/article/f8854e44d012440aa279f60cc27bbca5

المؤلفون: Gomi, Ryota, Wyres, Kelly L., Holt, Kathryn E.

المساهمون: 五味, 良太, 30794284

مصطلحات موضوعية: antimicrobial resistance gene, Klebsiella pneumoniae, plasmid detection, whole-genome sequencing

Relation: http://hdl.handle.net/2433/276585; Microbial Genomics; 000550

الاتاحة: http://hdl.handle.net/2433/276585

المؤلفون: Royer, G., Decousser, J. W., Branger, C., Dubois, M., Medigue, C., Denamur, E., Vallenet, David

المساهمون: Infection, Anti-microbiens, Modélisation, Evolution (IAME (UMR_S_1137 / U1137)), Université Paris 13 (UP13)-Université Paris Diderot - Paris 7 (UPD7)-Université Sorbonne Paris Cité (USPC)-Institut National de la Santé et de la Recherche Médicale (INSERM), Hôpital Henri Mondor, Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Hôpital Henri Mondor-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12), Analyse Bio-Informatique pour la Génomique et le Métabolisme (LABGeM), Génomique métabolique (UMR 8030), Genoscope - Centre national de séquençage Evry (GENOSCOPE), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS)-Genoscope - Centre national de séquençage Evry (GENOSCOPE), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS), AP-HP - Hôpital Bichat - Claude Bernard Paris, Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), Poste d'accueil AP-HP/CEA, Fondation pour la Recherche Medicale DEQ20161136698

المصدر: ISSN: 2057-5858.

مصطلحات موضوعية: plasmid detection, bioinformatic method, antimicrobial resistance, Escherichia coli, [SDV]Life Sciences [q-bio]

Relation: info:eu-repo/semantics/altIdentifier/pmid/30265232; PUBMED: 30265232; PUBMEDCENTRAL: PMC6202455

الاتاحة: https://cea.hal.science/cea-02291353
https://cea.hal.science/cea-02291353v1/document
https://cea.hal.science/cea-02291353v1/file/mgen-4-211.pdf
https://doi.org/10.1099/mgen.0.000211

المؤلفون: Elaine Lazalde, Adam T. Woolley, Robert L. Hanson, Yesman Akuoko, David H. Harris, Jacob B. Nielsen, Radim Knob

المصدر: Talanta Open, Vol 3, Iss, Pp 100034-(2021)
Talanta Open

مصطلحات موضوعية: Streptavidin, Multilabel fluorescence, QD71-142, DNA hybridization, Drug resistance, Article, chemistry.chemical_compound, Plasmid, chemistry, Biotin, Biochemistry, Plasmid detection, Polynucleotide, Nucleic acid, Gene, Analytical chemistry, DNA, Sequence-specific hybridization

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a0beb948f4729de1030eaf4482c40c47
http://www.sciencedirect.com/science/article/pii/S2666831921000047

المؤلفون: Kelly L. Wyres, Kathryn E. Holt, Ryota Gomi

المصدر: Microbial Genomics

مصطلحات موضوعية: Kraken, Bacterial genome size, Biology, computer.software_genre, Genome, 03 medical and health sciences, Plasmid, Databases, Genetic, parasitic diseases, Methods, Gene, 030304 developmental biology, Genomic Methodologies, Whole genome sequencing, 0303 health sciences, Whole Genome Sequencing, Contig, Database, 030306 microbiology, Bacterial genomics, food and beverages, General Medicine, Klebsiella pneumoniae, antimicrobial resistance gene, whole-genome sequencing, Horizontal gene transfer, plasmid detection, Antimicrobial resistance genes, computer, Genome, Bacterial, Plasmids

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ae22d4edb7784e90b210b72f874e5056
https://doi.org/10.1099/mgen.0.000550

المؤلفون: Schwengers, Oliver

مصطلحات موضوعية: bioinformatics, plasmid detection, WGS, microbial genomics

Relation: https://github.com/oschwengers/platon; https://doi.org/10.5281/zenodo.3349651; https://doi.org/10.5281/zenodo.3751774; oai:zenodo.org:3751774

الاتاحة: https://doi.org/10.5281/zenodo.3751774

المؤلفون: Schwengers, Oliver

مصطلحات موضوعية: bioinformatics, plasmid detection, WGS, microbial genomics

Relation: https://github.com/oschwengers/platon; https://doi.org/10.5281/zenodo.3349651; https://doi.org/10.5281/zenodo.3358926; oai:zenodo.org:3358926

الاتاحة: https://doi.org/10.5281/zenodo.3358926

المؤلفون: Erick Denamur, Catherine Branger, David Vallenet, J. W. Decousser, Mathieu Dubois, Claudine Médigue, Guilhem Royer

المساهمون: Infection, Anti-microbiens, Modélisation, Evolution (IAME (UMR_S_1137 / U1137)), Université Paris 13 (UP13)-Université Paris Diderot - Paris 7 (UPD7)-Université Sorbonne Paris Cité (USPC)-Institut National de la Santé et de la Recherche Médicale (INSERM), Hôpital Henri Mondor, Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Hôpital Henri Mondor-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12), Génomique métabolique (UMR 8030), Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS), AP-HP - Hôpital Bichat - Claude Bernard [Paris], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), Poste d'accueil AP-HP/CEA, Fondation pour la Recherche Medicale [DEQ20161136698], Assistance publique - Hôpitaux de Paris (AP-HP) (APHP)-Hôpital Henri Mondor-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS)-Université d'Évry-Val-d'Essonne (UEVE)

المصدر: Microbial Genomics
Microbial Genomics, 2018, 4 (9), pp.000211. ⟨10.1099/mgen.0.000211⟩
Microbial Genomics, Society for General Microbiology, 2018, 4 (9), pp.000211. ⟨10.1099/mgen.0.000211⟩

مصطلحات موضوعية: 0301 basic medicine, Virulence Factors, [SDV]Life Sciences [q-bio], 030106 microbiology, Methods Paper, Virulence, Computational biology, Genomic Methodologies: Data Clustering Methods, Genome, bioinformatic method, Workflow, 03 medical and health sciences, Plasmid, Drug Resistance, Bacterial, Operon, Escherichia coli, Replicon, antimicrobial resistance, Gene, biology, Whole Genome Sequencing, General Medicine, Chromosomes, Bacterial, biology.organism_classification, Enterobacteriaceae, Klebsiella pneumoniae, 030104 developmental biology, Metagenomics, plasmid detection, Plasmidome, Genome, Bacterial, Software, Plasmids

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6185a710cb396a1c460114d3028cc174
https://cea.hal.science/cea-02291353

المؤلفون: Gilliquet, Ethel, Zomer, Aldert (Thesis Advisor)

مصطلحات الفهرس: Plasmids are bacterial genetic elements replicated independently from the chromosome. To explore potential improvements of plasmid detection tools such as RFPlasmid, a machine learning pipeline was developed. Results show fully grown random forests and kmers cause models to overfit. Datasets used are too imbalanced, wide and noisy. The binary distinction between chromosomes and plasmids does not fit underlying biology. Feature selection did not improve explainability or reduce model complexity., Master Thesis, Student Thesis

URL: https://studenttheses.uu.nl/handle/20.500.12932/41699

المؤلفون: 30794284, Gomi, Ryota, Wyres, Kelly L., Holt, Kathryn E.

مصطلحات الفهرس: antimicrobial resistance gene, Klebsiella pneumoniae, plasmid detection, whole-genome sequencing, journal article

URL: http://hdl.handle.net/2433/276585
10.1099/mgen.0.000550