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1Academic Journal
المؤلفون: Kyra Erckert, Burkhard Rost
المصدر: Scientific Reports, Vol 14, Iss 1, Pp 1-14 (2024)
مصطلحات موضوعية: Embeddings, Machine learning, Evolutionary information, Protein language models, Multiple sequence alignments, Protein structure prediction, Medicine, Science
وصف الملف: electronic resource
Relation: https://doaj.org/toc/2045-2322
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2Dissertation/ Thesis
المؤلفون: Capella Gutiérrez, Salvador Jesús
المساهمون: University/Department: Universitat Pompeu Fabra. Departament de Ciències Experimentals i de la Salut
Thesis Advisors: Gabaldón Estevan, Juan Antonio
المصدر: TDX (Tesis Doctorals en Xarxa)
مصطلحات موضوعية: Evolution, Marker genes, Phylogenomics, Phylogenetic trees, Multiple Sequence Alignments, Fungi, Cyanobacteria, Microsporidia, Evolución, Filogenómica, Árboles filogenéticos, Marcadores filogenéticos, Alineamientos múltiples de secuencias, Hongos, Cianobacteria
وصف الملف: application/pdf
URL الوصول: http://hdl.handle.net/10803/97289
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3Academic Journal
المؤلفون: Wei Zheng, Qiqige Wuyun, Yang Zhang
المصدر: Clinical and Translational Medicine, Vol 14, Iss 6, Pp n/a-n/a (2024)
مصطلحات موضوعية: antibody−antigen interactions, deep‐learning, multiple sequence alignments, protein−protein complex structure prediction, Medicine (General), R5-920
وصف الملف: electronic resource
Relation: https://doaj.org/toc/2001-1326
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4Dissertation/ Thesis
المؤلفون: Tsenkov, Maxim Ivanov
المساهمون: Barton, Geoffrey, van Aalten, Daan
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5Academic Journal
المؤلفون: Cocco, Simona, Posani, Lorenzo, Monasson, Rémi
المساهمون: Physique Statistique et Inférence pour la Biologie, Laboratoire de physique de l'ENS - ENS Paris (LPENS), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)-Département de Physique de l'ENS-PSL, École normale supérieure - Paris (ENS-PSL), Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-École normale supérieure - Paris (ENS-PSL), Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)-Département de Physique de l'ENS-PSL, Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL), ANR-19-CE30-0021,DECRyPteD,Déchifrer les contraintes évolutionnaires sur les séquences d'ARN: des modèles physiques à la conception.(2019)
المصدر: ISSN: 0027-8424.
مصطلحات موضوعية: Inference of sparse graphical Potts models, Fitness prediction, Multiple sequence alignments, Mutational scans, Functional networks, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM], [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]
Relation: info:eu-repo/semantics/altIdentifier/pmid/38889151; PUBMED: 38889151; PUBMEDCENTRAL: PMC11214004
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6Academic Journal
المؤلفون: Juan Wang, Danqing Wang, Mingquan Huang, Baoguo Sun, Fazheng Ren, Jihong Wu, Jinglin Zhang, Hehe Li, Xiaotao Sun
مصطلحات موضوعية: Biochemistry, Cell Biology, Genetics, Molecular Biology, Pharmacology, Biotechnology, Developmental Biology, Cancer, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, multiple sequence alignments, molecular dynamics simulations, based luminescence assay, 98 ± 1, recombinant odorant receptors, sotolone enantiomers sotolone, 20 ± 0, 50 , 46 , >)- sotolone, odorant docking, r <, respectively ), potent agonist, odor characteristics, nutty aroma, important role, green aroma
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7Academic Journal
المؤلفون: Roman Sarrazin Gendron, Jérôme Waldispühl
مصطلحات موضوعية: Bioinformatic methods development, Sequence analysis, Collaborative and social computing, Human-computer interaction, Citizen science, RNA Bioinformatics, multiple sequence alignments (MSA), Citizen science games, Human microbiome health
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8Academic Journal
المؤلفون: Julius Ramakers, Christopher Frederik Blum, Sabrina König, Stefan Harmeling, Markus Kollmann
مصطلحات موضوعية: Biophysics, Biochemistry, Molecular Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, nucleic acid sequence, multiple sequence alignments, likely folding structures, experimentally measured structures, de novo <, chemical probing experiments, de novo prediction, achieving competitive results, rna 3d structures, given rna sequence, puzzles prediction challenges, div >< p, deep learning approach, deep learning, structure prediction, puzzle challenges, competitive performance, recent rna, score model, retrospective evaluation, predictive power, low number, blind predictions
Relation: https://figshare.com/articles/journal_contribution/Encoding_of_sequence_information_/25227320
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9Academic Journal
المؤلفون: Julius Ramakers, Christopher Frederik Blum, Sabrina König, Stefan Harmeling, Markus Kollmann
مصطلحات موضوعية: Biophysics, Biochemistry, Molecular Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, nucleic acid sequence, multiple sequence alignments, likely folding structures, experimentally measured structures, de novo <, chemical probing experiments, de novo prediction, achieving competitive results, rna 3d structures, given rna sequence, puzzles prediction challenges, div >< p, deep learning approach, deep learning, structure prediction, puzzle challenges, competitive performance, recent rna, score model, retrospective evaluation, predictive power, low number, blind predictions
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10Academic Journal
المؤلفون: Julius Ramakers, Christopher Frederik Blum, Sabrina König, Stefan Harmeling, Markus Kollmann
مصطلحات موضوعية: Biophysics, Biochemistry, Molecular Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, nucleic acid sequence, multiple sequence alignments, likely folding structures, experimentally measured structures, de novo <, chemical probing experiments, de novo prediction, achieving competitive results, rna 3d structures, given rna sequence, puzzles prediction challenges, div >< p, deep learning approach, deep learning, structure prediction, puzzle challenges, competitive performance, recent rna, score model, retrospective evaluation, predictive power, low number, blind predictions
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11Academic Journal
المؤلفون: Giovanna Linguiti, Vincenzo Tragni, Ciro Leonardo Pierri, Serafina Massari, Marie-Paule Lefranc, Rachele Antonacci, Salvatrice Ciccarese
المصدر: Frontiers in Immunology, Vol 13 (2022)
مصطلحات موضوعية: T cell receptor, Camelus dromedarius, TRG and TRD loci, multiple sequence alignments (MSA), 3D modelization, IMGT unique numbering, Immunologic diseases. Allergy, RC581-607
وصف الملف: electronic resource
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12Academic Journal
مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Molecular Biology, Evolutionary Biology, Infectious Diseases, Plant Biology, Virology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, three dynamical quantities, major drug targets, dynamical flexibility index, designing potent drugs, many viral diseases, 32 different proteins, quickly mutating residues, multiple sequence alignments, building quantitative bridges, amino acid sequences, 2 main protease, two proteins proteases, quantitative bridges, main protease, viral proteases, protease structures, understanding relations, studied relations, square fluctuations
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13Academic Journal
المؤلفون: Bereux, Stéphane, Delmas, Bernard, Cazals, Frédéric
المساهمون: Algorithms, Biology, Structure (ABS), Inria Sophia Antipolis - Méditerranée (CRISAM), Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
المصدر: ISSN: 0887-3585.
مصطلحات موضوعية: protein interface, multiple sequence alignments, interface comparison, interface RMSD, Structural Bioinformatics Library, coronaviruses, spikes, fusion proteins. Running title: Multiple Interface String Alignments, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]
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14Dissertation/ Thesis
المؤلفون: Chrysostomou, Charalambos
مصطلحات موضوعية: 006.3, amino acid indices, Allergens, Classification, Cluster of Differentiation 4, Dendrogram, Discrete Fourier Transform, Hierarchical Clustering, Influenza A virus, Multiple Sequence Alignments, Neuraminidase, Principal Component Analysis, Protein Sequences, Signal Processing Techniques, Subgroup Discovery, Support Vector Machines
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15Academic Journal
المؤلفون: Giovanna Linguiti, Sofia Kossida, Ciro Leonardo Pierri, Joumana Jabado-Michaloud, Geraldine Folch, Serafina Massari, Marie-Paule Lefranc, Salvatrice Ciccarese, Rachele Antonacci
المصدر: Genes; Volume 12; Issue 4; Pages: 571
مصطلحات موضوعية: T cell receptor, dolphin genome, TRB locus, TRBV, TRBJ, TRBD and TRBC genes, TRA and TRB gene expression analysis, multiple sequence alignments (MSA), 3D modelization, IMGT
جغرافية الموضوع: agris
وصف الملف: application/pdf
Relation: Molecular Genetics and Genomics; https://dx.doi.org/10.3390/genes12040571
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16Academic Journal
المؤلفون: Bereux, Stéphane, DELMAS, B, Cazals, Frédéric
المساهمون: Algorithms, Biology, Structure (ABS), Inria Sophia Antipolis - Méditerranée (CRISAM), Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
المصدر: ISSN: 0887-3585.
مصطلحات موضوعية: protein interface, multiple sequence alignments, interface comparison, interface RMSD, Structural Bioinformatics Library, coronaviruses, spikes, fusion proteins. Running title: Multiple Interface String Alignments, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]
Relation: hal-03387889; https://hal.inria.fr/hal-03387889; https://hal.inria.fr/hal-03387889/document; https://hal.inria.fr/hal-03387889/file/misa.pdf
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17Academic Journal
المصدر: PLoS ONE. 6(7)
مصطلحات موضوعية: short-chain dehydrogenase/reductase, multiple sequence alignments, hidden markov-models, progesterone 5-beta-reductase, protein evolution, arabidopsis-thaliana, maximum-likelihood, digitalis-purpurea, phylogenetic classification, bacterial communities
وصف الملف: application/pdf
URL الوصول: https://escholarship.org/uc/item/4007q1wd
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18Image
المؤلفون: Julius Ramakers, Christopher Frederik Blum, Sabrina König, Stefan Harmeling, Markus Kollmann
مصطلحات موضوعية: Biophysics, Biochemistry, Molecular Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, nucleic acid sequence, multiple sequence alignments, likely folding structures, experimentally measured structures, de novo <, chemical probing experiments, de novo prediction, achieving competitive results, rna 3d structures, given rna sequence, puzzles prediction challenges, div >< p, deep learning approach, deep learning, structure prediction, puzzle challenges, competitive performance, recent rna, score model, retrospective evaluation, predictive power, low number, blind predictions
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19Image
المؤلفون: Julius Ramakers, Christopher Frederik Blum, Sabrina König, Stefan Harmeling, Markus Kollmann
مصطلحات موضوعية: Biophysics, Biochemistry, Molecular Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, nucleic acid sequence, multiple sequence alignments, likely folding structures, experimentally measured structures, de novo <, chemical probing experiments, de novo prediction, achieving competitive results, rna 3d structures, given rna sequence, puzzles prediction challenges, div >< p, deep learning approach, deep learning, structure prediction, puzzle challenges, competitive performance, recent rna, score model, retrospective evaluation, predictive power, low number, blind predictions
Relation: https://figshare.com/articles/figure/Results_Evaluation_of_the_structural_predictions_/25227332
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20
المؤلفون: Julius Ramakers, Christopher Frederik Blum, Sabrina König, Stefan Harmeling, Markus Kollmann
مصطلحات موضوعية: Biophysics, Biochemistry, Molecular Biology, Infectious Diseases, Virology, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, nucleic acid sequence, multiple sequence alignments, likely folding structures, experimentally measured structures, de novo <, chemical probing experiments, de novo prediction, achieving competitive results, rna 3d structures, given rna sequence, puzzles prediction challenges, div >< p, deep learning approach, deep learning, structure prediction, puzzle challenges, competitive performance, recent rna, score model, retrospective evaluation, predictive power, low number, blind predictions
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