المؤلفون: van Otterdijk, Sander, Motealleh, Maryam, Wang, Zixu, Visser, Thomas D., Savakis, Philipp, Tutucci, Evelina

المساهمون: Haimovich, Gal

المصدر: van Otterdijk , S , Motealleh , M , Wang , Z , Visser , T D , Savakis , P & Tutucci , E 2024 , Single-Molecule Fluorescent In Situ Hybridization (smFISH) for RNA Detection in the Fungal Pathogen Candida albicans . in G Haimovich (ed.) , Fluorescence In Situ Hybridization (FISH) : Methods and Protocols . Methods in molecular biology (Clifton, N.J.) , vol. 2784 , Humama press , pp. 25-44 . https://doi.org/10.1007/978-1-0716-3766-1_2

مصطلحات موضوعية: Candida albicans, Fungal pathogen, RNA localization, Single-cell imaging, Single-molecule RNA FISH, smFISH

وصف الملف: application/pdf

Relation: urn:ISBN:9781071637654; urn:ISBN:9781071637685

الاتاحة: https://research.vu.nl/en/publications/811e1db7-39c8-405d-a5fd-0cf08c7b3ba5
https://doi.org/10.1007/978-1-0716-3766-1_2
https://hdl.handle.net/1871.1/811e1db7-39c8-405d-a5fd-0cf08c7b3ba5
https://research.vu.nl/ws/files/368716241/MiMB_Candida_smFISH_2024_vanOtterdijk_et_al.pdf
http://www.scopus.com/inward/record.url?scp=85188761090&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85188761090&partnerID=8YFLogxK

المؤلفون: Fang Zhao, Yunpeng Guan, Fei Su, Zhongbo Du, Shihui Wen, Le Zhang, Dayong Jin

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Molecular Biology, Space Science, widely used technique, utilizes click chemistry, indicating promising prospects, enabling secondary amplifications, copy nucleic acids, nuclear acid detection, density lanthanide complexes, click chemistry approach, infected hela cells, low fluorescence intensity, branched dna amplification, rna detection signal, signal intensity, signal amplification, infected cells, molecule rna, sensitive detection, using sars, two levels, substantial number, situ <, single cells, rnascope method, recognizing probes, rare populations

Relation: https://figshare.com/articles/journal_contribution/Lanthanide-Complex-Enhanced_Bioorthogonal_Branched_DNA_Amplification/24989233

الاتاحة: https://doi.org/10.1021/acs.analchem.3c04274.s001
https://figshare.com/articles/journal_contribution/Lanthanide-Complex-Enhanced_Bioorthogonal_Branched_DNA_Amplification/24989233

المؤلفون: Rajiv Pathak, Carolina Eliscovich, Ignacio Mena, Anastasija Cupic, Magdalena Rutkowska, Kartik Chandran, Rohit K. Jangra, Adolfo García-Sastre, Robert H. Singer, Ganjam V. Kalpana

المصدر: Viruses, Vol 16, Iss 2, p 262 (2024)

مصطلحات موضوعية: SARS-CoV-2, COVID-19, single molecule RNA-fluorescence in situ hybridization (smRNA-FISH), Immunofluorescence (IF), genomic and sub-genomic RNA replication, spike, Microbiology, QR1-502

Relation: https://www.mdpi.com/1999-4915/16/2/262; https://doaj.org/toc/1999-4915; https://doaj.org/article/5eb3557e958b465e866222b03412dab6

الاتاحة: https://doi.org/10.3390/v16020262
https://doaj.org/article/5eb3557e958b465e866222b03412dab6

المؤلفون: Coscujuela Tarrero L., Famà V., D'Andrea G., Maestri S., de Polo A., Biffo S., Furlan M., Pelizzola M.

المساهمون: Coscujuela Tarrero, L, Famà, V, D'Andrea, G, Maestri, S, de Polo, A, Biffo, S, Furlan, M, Pelizzola, M

مصطلحات موضوعية: RNA metabolism, RNA synthesis, RNA decay, single-molecule RNA sequencing, mathematical modelling, breast cancer, BIO/11 - BIOLOGIA MOLECOLARE

وصف الملف: ELETTRONICO

Relation: info:eu-repo/semantics/altIdentifier/pmid/39231948; info:eu-repo/semantics/altIdentifier/wos/WOS:001374708700015; volume:15; issue:1; journal:NATURE COMMUNICATIONS; https://hdl.handle.net/10281/512079

الاتاحة: https://hdl.handle.net/10281/512079
https://doi.org/10.1038/s41467-024-51917-2

المؤلفون: Rea L Antoniou-Kourounioti, Anis Meschichi, Svenja Reeck, Scott Berry, Govind Menon, Yusheng Zhao, John Fozard, Terri Holmes, Lihua Zhao, Huamei Wang, Matthew Hartley, Caroline Dean, Stefanie Rosa, Martin Howard

المصدر: eLife, Vol 12 (2023)

مصطلحات موضوعية: quantitative gene expression, Single molecule RNA FISH, FLC, mathematical modeling, Medicine, Science, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://elifesciences.org/articles/79743; https://doaj.org/toc/2050-084X

URL الوصول: https://doaj.org/article/b98106c04e584ea7ad9eaee38aee9b16

المؤلفون: Hansen, Maike MK, Desai, Ravi V, Simpson, Michael L, Weinberger, Leor S

المصدر: Cell Systems. 7(4)

مصطلحات موضوعية: Biochemistry and Cell Biology, Biological Sciences, Genetics, Human Genome, 1.1 Normal biological development and functioning, Generic health relevance, Animals, Biological Variation, Population, Cytoplasm, Embryonic Stem Cells, HEK293 Cells, Humans, Jurkat Cells, Mice, Models, Theoretical, RNA Processing, Post-Transcriptional, RNA, Messenger, Single Molecule Imaging, Single-Cell Analysis, Transcriptional Activation, bursting, mRNA degradation, mathematical modeling, noise amplification, noise attenuation, nuclear export, single molecule RNA FISH, stochastic noise, transcription, translation, Biochemistry and cell biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/4r60g1hz
https://escholarship.org/content/qt4r60g1hz/qt4r60g1hz.pdf

المؤلفون: Gerber, Alan, van Otterdijk, Sander, Bruggeman, Frank J., Tutucci, Evelina

المصدر: Gerber , A , van Otterdijk , S , Bruggeman , F J & Tutucci , E 2023 , ' Understanding spatiotemporal coupling of gene expression using single molecule RNA imaging technologies ' , Transcription , vol. 14 , no. 3-5 , pp. 105-126 . https://doi.org/10.1080/21541264.2023.2199669

مصطلحات موضوعية: eukaryotic gene expression, Gene expression coupling, prokaryotic gene expression, RNA localization, single-molecule RNA imaging, transcription-translation coupling

الاتاحة: https://research.vu.nl/en/publications/9d50576a-fb73-4597-ab0b-a00e1884819f
https://doi.org/10.1080/21541264.2023.2199669
https://hdl.handle.net/1871.1/9d50576a-fb73-4597-ab0b-a00e1884819f
http://www.scopus.com/inward/record.url?scp=85152967351&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85152967351&partnerID=8YFLogxK

المؤلفون: Francis A. Acquah, Blaine H. M. Mooers

المصدر: International Journal of Molecular Sciences; Volume 24; Issue 12; Pages: 10110

مصطلحات موضوعية: RNA–drug interactions, virtual screening, RNA–ligand interactions, RNA microscale thermophoresis, computer-aided drug design, RNA drug discovery, RNA targets, trypanosome RNA editing, small molecule–RNA docking, unsupervised machine learning

جغرافية الموضوع: agris

وصف الملف: application/pdf

Relation: Biochemistry; https://dx.doi.org/10.3390/ijms241210110

الاتاحة: https://doi.org/10.3390/ijms241210110

المؤلفون: Du, K, Cai, H, Park, M, Wall, TA, Stott, MA, Alfson, KJ, Griffiths, A, Carrion, R, Patterson, JL, Hawkins, AR, Schmidt, H, Mathies, RA

مصطلحات موضوعية: Nanotechnology, Biodefense, Infectious Diseases, Bioengineering, Prevention, Biotechnology, Vaccine Related, Infection, Good Health and Well Being, Biosensing Techniques, Ebolavirus, Equipment Design, Hemorrhagic Fever, Ebola, Humans, Limit of Detection, Microfluidic Analytical Techniques, Nucleic Acid Hybridization, Point-of-Care Systems, RNA, Viral, Solid Phase Extraction, Streptavidin, Microfluidics, Air-bubble mixing, Single molecule RNA detection, Point-of-care, Analytical Chemistry, Biomedical Engineering, Bioinformatics

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/2g0589zt

المؤلفون: Ye Yuan, Marc-Antonio Padilla, Dunham Clark, Swathi Yadlapalli

المصدر: Frontiers in Physiology, Vol 13 (2022)

مصطلحات موضوعية: circadian rhythms, single molecule RNA-fluorescence in situ hybridization (smFISH), machine learning-based analysis pipeline, spatiotemporal organization of clock mRNAs, Drosophila clock neurons, Physiology, QP1-981

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fphys.2022.1051544/full; https://doaj.org/toc/1664-042X

URL الوصول: https://doaj.org/article/8822e4b7e0194a2fac3604f5dbb6fc37

المؤلفون: Rasmani Hazra, David L. Spector

المصدر: Frontiers in Cell and Developmental Biology, Vol 10 (2022)

مصطلحات موضوعية: lncRNA, mRNA, mouse embryo, whole-mount, single-molecule RNA FISH, immunofluorescence, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcell.2022.986261/full; https://doaj.org/toc/2296-634X

URL الوصول: https://doaj.org/article/d44c5569340c4c82a2bdfd764d8360a1

المؤلفون: Dey, Siddharth S, Foley, Jonathan E, Limsirichai, Prajit, Schaffer, David V, Arkin, Adam P

المصدر: Molecular systems biology. 11(5)

مصطلحات موضوعية: Jurkat Cells, Chromatin, Humans, Proteins, RNA, Messenger, Genomics, Epigenesis, Genetic, Models, Genetic, Half-Life, Promoter Regions, Genetic, HEK293 Cells, chromatin environment, gene expression noise, single‐cell biology, single‐molecule RNA FISH, single-cell biology, single-molecule RNA FISH, RNA, Messenger, Epigenesis, Genetic, Models, Promoter Regions, Bioinformatics, Biochemistry and Cell Biology, Other Biological Sciences

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/0ht704sv

المؤلفون: Aakash Koppula, Ahmed Abdelgawad, Jlenia Guarnerio, Mona Batish, Vijay Parashar

المصدر: Cancers; Volume 14; Issue 2; Pages: 428

مصطلحات موضوعية: single-molecule RNA imaging, circular RNAs, RNase R, nucleic acid probes, non-coding RNAs, fixed cells, FFPE, frozen tissues, multiplex RNA imaging, immunofluorescence, subcellular RNA localization

وصف الملف: application/pdf

Relation: Molecular Cancer Biology; https://dx.doi.org/10.3390/cancers14020428

الاتاحة: https://doi.org/10.3390/cancers14020428

المساهمون: Arkin, Adam [University of California, Berkeley, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)]

المصدر: Molecular Systems Biology; 11; 5

وصف الملف: Medium: ED; Size: Article No. 806

URL الوصول: http://www.osti.gov/scitech/servlets/purl/1213434

المؤلفون: O'Brien, Brett M., Jiménez-Avalos, Gabriel, Kaiser, Christian M., Woodson, Sarah A.

المساهمون: Woodson, Sarah

مصطلحات موضوعية: Medicine, Health and Life Sciences, Physics, Huntington’s Disease, repeat expansion disease, CAG repeats, optical trap force spectroscopy, single molecule RNA folding

Relation: https://doi.org/10.7281/T1/GTUUUG

الاتاحة: https://doi.org/10.7281/T1/GTUUUG

المؤلفون: Jinhan Ren (7161068), Kyu Young Han (101911)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Physiology, Biotechnology, Space Science, Chemical Sciences not elsewhere classified, report 2.5 D microscopy, 2.5 D Microscopy, 2 D image plane, Quantitative Subcellular Analysis I., imaging depth, fluorescence imaging systems, single-molecule RNA measurements

Relation: https://figshare.com/articles/journal_contribution/2_5D_Microscopy_Fast_High-Throughput_Imaging_via_Volumetric_Projection_for_Quantitative_Subcellular_Analysis/14119863

الاتاحة: https://doi.org/10.1021/acsphotonics.1c00012.s003

المؤلفون: Fatu Badiane Markey, Brigette Romero, Vijay Parashar, Mona Batish

المصدر: Cells; Volume 10; Issue 6; Pages: 1300

مصطلحات موضوعية: EWSFLI1, STEAP1, single molecule RNA imaging, smFISH, Ewing’s Sarcoma, NKX2.2, co-regulation, ChIP, luciferase assay

وصف الملف: application/pdf

Relation: Cell and Gene Therapy; https://dx.doi.org/10.3390/cells10061300

الاتاحة: https://doi.org/10.3390/cells10061300

المؤلفون: Saurav Mallik

مصطلحات موضوعية: Proteomics and intermolecular interactions (excl. medical proteomics), Structural biology (incl. macromolecular modelling), Systems biology, Proteomics and metabolomics, Co-translational Assembly, Translation (Process), central dogma of molecular biology (CDMB), Protein degradation, Protein Complex Structure, complex subunits, Proteomics Data Analysis, transcriptomics data analysis, Co-translational assembly predictions, single-molecule RNA FISH, selective ribosome profiling

Relation: https://figshare.com/articles/dataset/_b_Structural_determinants_of_co-translational_protein_complex_assembly_b_/25370944

الاتاحة: https://doi.org/10.6084/m9.figshare.25370944.v1

المصدر: Transcription.

مصطلحات موضوعية: single-molecule RNA imaging, transcription-translation coupling, eukaryotic gene expression, Gene expression coupling, prokaryotic gene expression, RNA localization

URL الوصول: https://explore.openaire.eu/search/publication?articleId=od______4612::0534840d84a8bfeb430a5a00c2ab993b
https://research.vu.nl/en/publications/9d50576a-fb73-4597-ab0b-a00e1884819f

المؤلفون: Siddharth S Dey, Jonathan E Foley, Prajit Limsirichai, David V Schaffer, Adam P Arkin

المصدر: Molecular Systems Biology, Vol 11, Iss 5, Pp 1-14 (2015)

مصطلحات موضوعية: chromatin environment, gene expression noise, single‐cell biology, single‐molecule RNA FISH, Biology (General), QH301-705.5, Medicine (General), R5-920

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1744-4292

URL الوصول: https://doaj.org/article/a7637335e71840668b2999850f3e40a9