المؤلفون: Fanny Rusman, Anahí G. Díaz, Tatiana Ponce, Noelia Floridia-Yapur, Christian Barnabé, Patricio Diosque, Nicolás Tomasini

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Molecular Biology, Biotechnology, Cancer, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, relatively low cost, minicircle hypervariable regions, minicircle hypervariable region, wide reference databases, present reference databases, screening different types, different identity thresholds, simple online tool, significant biological differences, proposed workflow could, strain typing techniques, 62 strains belonging, typing samples obtained, optimized typing workflow, build reference databases, trypanosoma cruzi <, typing tool, reference sets, workflow ’, workflow displays, cruzi <, blood samples

Relation: https://figshare.com/articles/journal_contribution/Reads_obtained_after_different_steps_in_the_pipeline_/24555656

الاتاحة: https://doi.org/10.1371/journal.pntd.0011764.s001
https://figshare.com/articles/journal_contribution/Reads_obtained_after_different_steps_in_the_pipeline_/24555656

المؤلفون: Fanny Rusman, Anahí G. Díaz, Tatiana Ponce, Noelia Floridia-Yapur, Christian Barnabé, Patricio Diosque, Nicolás Tomasini

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Molecular Biology, Biotechnology, Cancer, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, relatively low cost, minicircle hypervariable regions, minicircle hypervariable region, wide reference databases, present reference databases, screening different types, different identity thresholds, simple online tool, significant biological differences, proposed workflow could, strain typing techniques, 62 strains belonging, typing samples obtained, optimized typing workflow, build reference databases, trypanosoma cruzi <, typing tool, reference sets, workflow ’, workflow displays, cruzi <, blood samples

Relation: https://figshare.com/articles/journal_contribution/Evaluation_of_the_PCR_simulating_algorithm_by_comparison_against_a_duplicate_experimental_PCR_of_mHVRs_from_the_LL015P68R0cl4_strain_TcVI_/24555665

الاتاحة: https://doi.org/10.1371/journal.pntd.0011764.s004
https://figshare.com/articles/journal_contribution/Evaluation_of_the_PCR_simulating_algorithm_by_comparison_against_a_duplicate_experimental_PCR_of_mHVRs_from_the_LL015P68R0cl4_strain_TcVI_/24555665

المؤلفون: Fanny Rusman, Anahí G. Díaz, Tatiana Ponce, Noelia Floridia-Yapur, Christian Barnabé, Patricio Diosque, Nicolás Tomasini

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Molecular Biology, Biotechnology, Cancer, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, relatively low cost, minicircle hypervariable regions, minicircle hypervariable region, wide reference databases, present reference databases, screening different types, different identity thresholds, simple online tool, significant biological differences, proposed workflow could, strain typing techniques, 62 strains belonging, typing samples obtained, optimized typing workflow, build reference databases, trypanosoma cruzi <, typing tool, reference sets, workflow ’, workflow displays, cruzi <, blood samples

Relation: https://figshare.com/articles/journal_contribution/True_and_false-positive_rates_for_different_reference_sets_on_reads_and_strains_/24555659

الاتاحة: https://doi.org/10.1371/journal.pntd.0011764.s002
https://figshare.com/articles/journal_contribution/True_and_false-positive_rates_for_different_reference_sets_on_reads_and_strains_/24555659

المؤلفون: Fanny Rusman, Anahí G. Díaz, Tatiana Ponce, Noelia Floridia-Yapur, Christian Barnabé, Patricio Diosque, Nicolás Tomasini

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Molecular Biology, Biotechnology, Cancer, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, relatively low cost, minicircle hypervariable regions, minicircle hypervariable region, wide reference databases, present reference databases, screening different types, different identity thresholds, simple online tool, significant biological differences, proposed workflow could, strain typing techniques, 62 strains belonging, typing samples obtained, optimized typing workflow, build reference databases, trypanosoma cruzi <, typing tool, reference sets, workflow ’, workflow displays, cruzi <, blood samples

Relation: https://figshare.com/articles/figure/The_usefulness_of_the_95_set_of_mHVR_reference_sequences_for_typing_data_from_whole-genome_projects_/24555662

الاتاحة: https://doi.org/10.1371/journal.pntd.0011764.s003
https://figshare.com/articles/figure/The_usefulness_of_the_95_set_of_mHVR_reference_sequences_for_typing_data_from_whole-genome_projects_/24555662

المؤلفون: Fanny Rusman, Anahí G. Díaz, Tatiana Ponce, Noelia Floridia-Yapur, Christian Barnabé, Patricio Diosque, Nicolás Tomasini

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Molecular Biology, Biotechnology, Cancer, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, relatively low cost, minicircle hypervariable regions, minicircle hypervariable region, wide reference databases, present reference databases, screening different types, different identity thresholds, simple online tool, significant biological differences, proposed workflow could, strain typing techniques, 62 strains belonging, typing samples obtained, optimized typing workflow, build reference databases, trypanosoma cruzi <, typing tool, reference sets, workflow ’, workflow displays, cruzi <, blood samples

Relation: https://figshare.com/articles/figure/The_efficiency_of_reference_sets_for_typing_simulated_PCRs_/24555683

الاتاحة: https://doi.org/10.1371/journal.pntd.0011764.g004
https://figshare.com/articles/figure/The_efficiency_of_reference_sets_for_typing_simulated_PCRs_/24555683

المؤلفون: Fanny Rusman, Anahí G. Díaz, Tatiana Ponce, Noelia Floridia-Yapur, Christian Barnabé, Patricio Diosque, Nicolás Tomasini

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Molecular Biology, Biotechnology, Cancer, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, relatively low cost, minicircle hypervariable regions, minicircle hypervariable region, wide reference databases, present reference databases, screening different types, different identity thresholds, simple online tool, significant biological differences, proposed workflow could, strain typing techniques, 62 strains belonging, typing samples obtained, optimized typing workflow, build reference databases, trypanosoma cruzi <, typing tool, reference sets, workflow ’, workflow displays, cruzi <, blood samples

Relation: https://figshare.com/articles/figure/Comparison_between_Southern_blot_and_deep_amplicon_sequencing_/24555689

الاتاحة: https://doi.org/10.1371/journal.pntd.0011764.g006
https://figshare.com/articles/figure/Comparison_between_Southern_blot_and_deep_amplicon_sequencing_/24555689

المؤلفون: Fanny Rusman, Anahí G. Díaz, Tatiana Ponce, Noelia Floridia-Yapur, Christian Barnabé, Patricio Diosque, Nicolás Tomasini

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Molecular Biology, Biotechnology, Cancer, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, relatively low cost, minicircle hypervariable regions, minicircle hypervariable region, wide reference databases, present reference databases, screening different types, different identity thresholds, simple online tool, significant biological differences, proposed workflow could, strain typing techniques, 62 strains belonging, typing samples obtained, optimized typing workflow, build reference databases, trypanosoma cruzi <, typing tool, reference sets, workflow ’, workflow displays, cruzi <, blood samples

Relation: https://figshare.com/articles/figure/The_usefulness_of_sets_of_mHVR_reference_sequences_for_typing_each_strain_/24555677

الاتاحة: https://doi.org/10.1371/journal.pntd.0011764.g002
https://figshare.com/articles/figure/The_usefulness_of_sets_of_mHVR_reference_sequences_for_typing_each_strain_/24555677

المؤلفون: Fanny Rusman, Anahí G. Díaz, Tatiana Ponce, Noelia Floridia-Yapur, Christian Barnabé, Patricio Diosque, Nicolás Tomasini

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Molecular Biology, Biotechnology, Cancer, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, relatively low cost, minicircle hypervariable regions, minicircle hypervariable region, wide reference databases, present reference databases, screening different types, different identity thresholds, simple online tool, significant biological differences, proposed workflow could, strain typing techniques, 62 strains belonging, typing samples obtained, optimized typing workflow, build reference databases, trypanosoma cruzi <, typing tool, reference sets, workflow ’, workflow displays, cruzi <, blood samples

Relation: https://figshare.com/articles/dataset/Reads_obtained_from_blood_samples_and_percentages_of_clustering_against_each_DTU_/24555671

الاتاحة: https://doi.org/10.1371/journal.pntd.0011764.s006
https://figshare.com/articles/dataset/Reads_obtained_from_blood_samples_and_percentages_of_clustering_against_each_DTU_/24555671

المؤلفون: Fanny Rusman, Anahí G. Díaz, Tatiana Ponce, Noelia Floridia-Yapur, Christian Barnabé, Patricio Diosque, Nicolás Tomasini

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Molecular Biology, Biotechnology, Cancer, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, relatively low cost, minicircle hypervariable regions, minicircle hypervariable region, wide reference databases, present reference databases, screening different types, different identity thresholds, simple online tool, significant biological differences, proposed workflow could, strain typing techniques, 62 strains belonging, typing samples obtained, optimized typing workflow, build reference databases, trypanosoma cruzi <, typing tool, reference sets, workflow ’, workflow displays, cruzi <, blood samples

Relation: https://figshare.com/articles/figure/The_usefulness_of_the_95_mHVR_reference_sequences_set_for_typing_data_from_whole-genome_projects_/24555680

الاتاحة: https://doi.org/10.1371/journal.pntd.0011764.g003
https://figshare.com/articles/figure/The_usefulness_of_the_95_mHVR_reference_sequences_set_for_typing_data_from_whole-genome_projects_/24555680

المؤلفون: Fanny Rusman, Anahí G. Díaz, Tatiana Ponce, Noelia Floridia-Yapur, Christian Barnabé, Patricio Diosque, Nicolás Tomasini

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Molecular Biology, Biotechnology, Cancer, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, relatively low cost, minicircle hypervariable regions, minicircle hypervariable region, wide reference databases, present reference databases, screening different types, different identity thresholds, simple online tool, significant biological differences, proposed workflow could, strain typing techniques, 62 strains belonging, typing samples obtained, optimized typing workflow, build reference databases, trypanosoma cruzi <, typing tool, reference sets, workflow ’, workflow displays, cruzi <, blood samples

Relation: https://figshare.com/articles/figure/Sensitivity_for_detecting_secondary_DTUs_in_the_simulated_samples_/24555686

الاتاحة: https://doi.org/10.1371/journal.pntd.0011764.g005
https://figshare.com/articles/figure/Sensitivity_for_detecting_secondary_DTUs_in_the_simulated_samples_/24555686

المؤلفون: Fanny Rusman, Anahí G. Díaz, Tatiana Ponce, Noelia Floridia-Yapur, Christian Barnabé, Patricio Diosque, Nicolás Tomasini

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Molecular Biology, Biotechnology, Cancer, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, relatively low cost, minicircle hypervariable regions, minicircle hypervariable region, wide reference databases, present reference databases, screening different types, different identity thresholds, simple online tool, significant biological differences, proposed workflow could, strain typing techniques, 62 strains belonging, typing samples obtained, optimized typing workflow, build reference databases, trypanosoma cruzi <, typing tool, reference sets, workflow ’, workflow displays, cruzi <, blood samples

Relation: https://figshare.com/articles/dataset/Strains_used_in_this_work_/24555692

الاتاحة: https://doi.org/10.1371/journal.pntd.0011764.t001
https://figshare.com/articles/dataset/Strains_used_in_this_work_/24555692

المؤلفون: Fanny Rusman, Anahí G. Díaz, Tatiana Ponce, Noelia Floridia-Yapur, Christian Barnabé, Patricio Diosque, Nicolás Tomasini

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Molecular Biology, Biotechnology, Cancer, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, relatively low cost, minicircle hypervariable regions, minicircle hypervariable region, wide reference databases, present reference databases, screening different types, different identity thresholds, simple online tool, significant biological differences, proposed workflow could, strain typing techniques, 62 strains belonging, typing samples obtained, optimized typing workflow, build reference databases, trypanosoma cruzi <, typing tool, reference sets, workflow ’, workflow displays, cruzi <, blood samples

Relation: https://figshare.com/articles/dataset/Strains_DTUs_NCBI_SRA_accession_codes_of_the_analyzed_whole_genome_files_/24555695

الاتاحة: https://doi.org/10.1371/journal.pntd.0011764.t002
https://figshare.com/articles/dataset/Strains_DTUs_NCBI_SRA_accession_codes_of_the_analyzed_whole_genome_files_/24555695

المؤلفون: Fanny Rusman, Anahí G. Díaz, Tatiana Ponce, Noelia Floridia-Yapur, Christian Barnabé, Patricio Diosque, Nicolás Tomasini

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Molecular Biology, Biotechnology, Cancer, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, relatively low cost, minicircle hypervariable regions, minicircle hypervariable region, wide reference databases, present reference databases, screening different types, different identity thresholds, simple online tool, significant biological differences, proposed workflow could, strain typing techniques, 62 strains belonging, typing samples obtained, optimized typing workflow, build reference databases, trypanosoma cruzi <, typing tool, reference sets, workflow ’, workflow displays, cruzi <, blood samples

Relation: https://figshare.com/articles/dataset/Cutoffs_for_the_minimum_DTU-tag_frequency_indicate_the_presence_of_a_secondary_DTU_in_the_sample_according_to_the_main_DTU_with_the_associated_error_probability_for_PCR_simulations_based_on_the_95_reference_set_/24555698

الاتاحة: https://doi.org/10.1371/journal.pntd.0011764.t003
https://figshare.com/articles/dataset/Cutoffs_for_the_minimum_DTU-tag_frequency_indicate_the_presence_of_a_secondary_DTU_in_the_sample_according_to_the_main_DTU_with_the_associated_error_probability_for_PCR_simulations_based_on_the_95_reference_set_/24555698

المؤلفون: Fanny Rusman, Anahí G. Díaz, Tatiana Ponce, Noelia Floridia-Yapur, Christian Barnabé, Patricio Diosque, Nicolás Tomasini

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Molecular Biology, Biotechnology, Cancer, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, relatively low cost, minicircle hypervariable regions, minicircle hypervariable region, wide reference databases, present reference databases, screening different types, different identity thresholds, simple online tool, significant biological differences, proposed workflow could, strain typing techniques, 62 strains belonging, typing samples obtained, optimized typing workflow, build reference databases, trypanosoma cruzi <, typing tool, reference sets, workflow ’, workflow displays, cruzi <, blood samples

Relation: https://figshare.com/articles/dataset/Cutoffs_for_the_minimum_DTU-tag_frequency_indicate_the_presence_of_a_secondary_DTU_in_the_sample_according_to_the_main_DTU_with_the_associated_error_probability_for_PCR_simulations_based_on_the_85_reference_set_/24555701

الاتاحة: https://doi.org/10.1371/journal.pntd.0011764.t004
https://figshare.com/articles/dataset/Cutoffs_for_the_minimum_DTU-tag_frequency_indicate_the_presence_of_a_secondary_DTU_in_the_sample_according_to_the_main_DTU_with_the_associated_error_probability_for_PCR_simulations_based_on_the_85_reference_set_/24555701

المؤلفون: Fanny Rusman, Anahí G. Díaz, Tatiana Ponce, Noelia Floridia-Yapur, Christian Barnabé, Patricio Diosque, Nicolás Tomasini

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Molecular Biology, Biotechnology, Cancer, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, relatively low cost, minicircle hypervariable regions, minicircle hypervariable region, wide reference databases, present reference databases, screening different types, different identity thresholds, simple online tool, significant biological differences, proposed workflow could, strain typing techniques, 62 strains belonging, typing samples obtained, optimized typing workflow, build reference databases, trypanosoma cruzi <, typing tool, reference sets, workflow ’, workflow displays, cruzi <, blood samples

Relation: https://figshare.com/articles/dataset/Proportion_of_mHVR_clusters_shared_between_different_genomes_and_different_strains_in_the_95_reference_dataset_/24555668

الاتاحة: https://doi.org/10.1371/journal.pntd.0011764.s005
https://figshare.com/articles/dataset/Proportion_of_mHVR_clusters_shared_between_different_genomes_and_different_strains_in_the_95_reference_dataset_/24555668