المؤلفون: Rituparna Samanta, Jeffrey J. Gray

مصطلحات موضوعية: Biophysics, Biochemistry, Molecular Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, energy function franklin2023, dependent dielectric constant, capture electrostatic features, built upon franklin2019, different lipid bilayers, lipid layer, tilt angle, sequence recovery, realistic characteristics, protein orientation, method captures, membrane proteins, membrane environment, long time, length scales, implicit model, challenging due, boltzmann calculations

Relation: https://figshare.com/articles/journal_contribution/Implicit_model_to_capture_electrostatic_features_of_membrane_environment_/25043256

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011296.s001
https://figshare.com/articles/journal_contribution/Implicit_model_to_capture_electrostatic_features_of_membrane_environment_/25043256

المؤلفون: Yan Zhang, Yuefang Gan, Weijing Zhao, Xuning Zhang, Yongxiang Zhao, Huayong Xie, Jun Yang

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Biotechnology, Infectious Diseases, Virology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, state nmr spectroscopy, providing valuable insights, methanosarcina acetivorans (<, conducting residue site, combines various strategies, specific structural analysis, performing structural characterizations, native functional context, background protein signals, resolution structural characterization, native cellular membranes, membrane proteins within, cellular membrane environment, poor spectral sensitivity, membrane protein structures, structural characterization, native membranes, membrane proteins, membrane environment, target protein, serious interference

Relation: https://figshare.com/articles/journal_contribution/Membrane_Protein_Structures_in_Native_Cellular_Membranes_Revealed_by_Solid-State_NMR_Spectroscopy/24599443

الاتاحة: https://doi.org/10.1021/jacsau.3c00564.s001
https://figshare.com/articles/journal_contribution/Membrane_Protein_Structures_in_Native_Cellular_Membranes_Revealed_by_Solid-State_NMR_Spectroscopy/24599443

المؤلفون: Bacchella, Chiara, Camponeschi, Francesca, Kolkowska, Paulina, Kola, Arian, Tessari, Isabella, Baratto, Maria Camilla, Bisaglia, Marco, Monzani, Enrico, Bubacco, Luigi, Mangani, Stefano, Casella, Luigi, Dell'Acqua, Simone, Valensin, Daniela

المساهمون: Bacchella, Chiara, Camponeschi, Francesca, Kolkowska, Paulina, Kola, Arian, Tessari, Isabella, Baratto, Maria Camilla, Bisaglia, Marco, Monzani, Enrico, Bubacco, Luigi, Mangani, Stefano, Casella, Luigi, Dell'Acqua, Simone, Valensin, Daniela

مصطلحات موضوعية: copper(I), copper(II), membrane environment, redox activity, synuclein, α-helix

وصف الملف: ELETTRONICO

Relation: info:eu-repo/semantics/altIdentifier/pmid/36830656; info:eu-repo/semantics/altIdentifier/wos/WOS:000939350100001; volume:13; issue:2; firstpage:1; lastpage:19; numberofpages:19; journal:BIOMOLECULES; https://hdl.handle.net/11365/1239954; info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85149032315; https://www.mdpi.com/2218-273X/13/2/287; https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9953312/

الاتاحة: https://hdl.handle.net/11365/1239954
https://doi.org/10.3390/biom13020287
https://www.mdpi.com/2218-273X/13/2/287
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9953312/

المؤلفون: Wei Peng, Zikuan Wang, Qiaoyu Zhang, Shengheng Yan, Binju Wang

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Cell Biology, Genetics, Computational Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, sup >•–, productive binding conformation, extensive computational studies, em data indicates, comprehensive analysis comparing, binding cavity situated, bound pmmos may, natural reductant ubiquinol, true active site, genuine active site, c , (, 2 , valence state within, recently characterized structure, mm calculations reveal, bound pmmo ’, membrane environment ’, , valence state, copper ’

Relation: https://figshare.com/articles/journal_contribution/Unraveling_the_Valence_State_and_Reactivity_of_Copper_Centers_in_Membrane-Bound_Particulate_Methane_Monooxygenase/24552794

الاتاحة: https://doi.org/10.1021/jacs.3c08834.s001
https://figshare.com/articles/journal_contribution/Unraveling_the_Valence_State_and_Reactivity_of_Copper_Centers_in_Membrane-Bound_Particulate_Methane_Monooxygenase/24552794

المؤلفون: Anna K. Wright (1322592), Joana Paulino (12014816), Timothy A. Cross (1316430)

مصطلحات موضوعية: Biophysics, Biochemistry, Genetics, Molecular Biology, Biotechnology, Hematology, Infectious Diseases, Physical Sciences not elsewhere classified, well recognized today, trp41 functional sites, small membrane proteins, membrane proteins needs, channel main axis, m2 membrane protein, m2 wt structure, s31n m2 protein, single transmembrane helix, oriented sample solid, high molar ratio, emulated membrane environment, protein data bank, influenza s31n m2, native protein structure, s31n m2, protein ratio, protein include, single conformation, amphipathic helix, symmetric structure, native structure

Relation: https://figshare.com/articles/journal_contribution/Emulating_Membrane_Protein_Environments_How_Much_Lipid_Is_Required_for_a_Native_Structure_Influenza_S31N_M2/19087790

الاتاحة: https://doi.org/10.1021/jacs.1c10174.s001

المؤلفون: L. Schmüser (11641866), M. Trefz (11641869), S. J. Roeters (1298394), W. Beckner (11641872), J. Pfaendtner (11641875), D. Otzen (11641878), S. Woutersen (1298391), M. Bonn (1298397), D. Schneider (4030076), T. Weidner (1782385)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Infectious Diseases, Computational Biology, Biological Sciences not elsewhere classified, Physical Sciences not elsewhere classified, understanding cell biology, sensitive vibrational spectroscopy, selectively transport water, new medical drugs, molecular dynamics simulations, glycerol molecules across, glycerol facilitator channel, drug delivery strategies, resolution structural information, native membrane environment, level information, membrane barrier, situ <, significant differences, ray diffraction, provide angstrom, find subtle, combined experimental, chemically stabilized, based design, aquaporin observed

Relation: https://figshare.com/articles/journal_contribution/Membrane_Structure_of_Aquaporin_Observed_with_Combined_Experimental_and_Theoretical_Sum_Frequency_Generation_Spectroscopy/16923534

الاتاحة: https://doi.org/10.1021/acs.langmuir.1c02206.s001

المؤلفون: Thirupathi Ravula (4471630), Xiaofeng Dai (793874), Ayyalusamy Ramamoorthy (764131)

مصطلحات موضوعية: Biophysics, Biochemistry, Biotechnology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Such polymer-based nanodiscs, polymer-based lipid nanodiscs, DMPC, magnetic-alignment behavior, Phosphorus -31 NMR experiments, Mg, solution NMR spectroscopies, lipid nanodiscs, SMA-QA, styrene maleimide quaternary ammonium, Polymer-Based Lipid Nanodiscs Dival., Divalent Metal Ions, Solid-State NMR Study, near-native cell-membrane environment

Relation: https://figshare.com/articles/journal_contribution/Solid-State_NMR_Study_to_Probe_the_Effects_of_Divalent_Metal_Ions_Ca_sup_2_sup_and_Mg_sup_2_sup_on_the_Magnetic_Alignment_of_Polymer-Based_Lipid_Nanodiscs/14786224

الاتاحة: https://doi.org/10.1021/acs.langmuir.1c01018.s001

المؤلفون: Stéphanie Andrade (10981986), Joana A. Loureiro (10981989), Maria C. Pereira (10981992)

مصطلحات موضوعية: Biophysics, Biochemistry, Medicine, Cell Biology, Neuroscience, Pharmacology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, fibril, Vitamin B 12 Inhibits, formation, vitamin B 12, Synthetic Neuronal Membranes, lipid membrane environment, Disaggregates Preformed Fibrils, VB 12, AD

Relation: https://figshare.com/articles/journal_contribution/Vitamin_B12_Inhibits_A_Fibrillation_and_Disaggregates_Preformed_Fibrils_in_the_Presence_of_Synthetic_Neuronal_Membranes/14794422

الاتاحة: https://doi.org/10.1021/acschemneuro.1c00210.s001

المؤلفون: Zhi Cheng (729515), Charles Mobley (10682034), Sandeep K. Misra (5871581), Rama S. Gadepalli (2637247), Rachel I. Hammond (10682037), Leonid S. Brown (649423), John M. Rimoldi (2353753), Joshua S. Sharp (1496491)

مصطلحات موضوعية: Biochemistry, Medicine, Microbiology, Cell Biology, Physiology, Developmental Biology, Infectious Diseases, Virology, Environmental Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, hydroxyl radicals, Poor Hydroxyl Radical Scavengers, oxidation, membrane environment acts, integral membrane proteins, Triton X-series amphiphile, Fast Photochemical Oxidation, integral membrane protein bacterior., membrane protein topography, micelle concentration, FPOP, Proteins Experiments Analysis

Relation: https://figshare.com/articles/journal_contribution/Self-Organized_Amphiphiles_Are_Poor_Hydroxyl_Radical_Scavengers_in_Fast_Photochemical_Oxidation_of_Proteins_Experiments/14461881

الاتاحة: https://doi.org/10.1021/jasms.0c00457.s001

المؤلفون: Marc A. Dämgen (10131695), Philip C. Biggin (122818)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Neuroscience, Pharmacology, Biotechnology, Inorganic Chemistry, Infectious Diseases, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, membrane Pentameric ligand-gated io., lipid-protein interactions, protein-lipid interaction sites, transmembrane domain, protein-lipid interactions, communication interface, lipid-like allosteric drugs, binding site, State-dependent protein-lipid inter., receptor state, pLGIC, lipid binding sites, receptor proteins, allosteric modulator ivermectin, dynamics simulations, glycine receptor, membrane environment, pentameric ligand-gated ion channel

Relation: https://figshare.com/articles/journal_contribution/Probability_densities_of_cholesterol_for_each_individual_simulation_repeat_around_the_receptor_in_the_extracellular_and_intracellular_leaflet_for_the_inactive_and_active_state_/13920281

الاتاحة: https://doi.org/10.1371/journal.pcbi.1007856.s003

المؤلفون: Marc A. Dämgen (10131695), Philip C. Biggin (122818)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Neuroscience, Pharmacology, Biotechnology, Inorganic Chemistry, Infectious Diseases, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, membrane Pentameric ligand-gated io., lipid-protein interactions, protein-lipid interaction sites, transmembrane domain, protein-lipid interactions, communication interface, lipid-like allosteric drugs, binding site, State-dependent protein-lipid inter., receptor state, pLGIC, lipid binding sites, receptor proteins, allosteric modulator ivermectin, dynamics simulations, glycine receptor, membrane environment, pentameric ligand-gated ion channel

Relation: https://figshare.com/articles/journal_contribution/Comparison_of_lipid_binding_sites_to_other_pLGIC_members_/13920275

الاتاحة: https://doi.org/10.1371/journal.pcbi.1007856.s001

المؤلفون: Marc A. Dämgen (10131695), Philip C. Biggin (122818)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Neuroscience, Pharmacology, Biotechnology, Inorganic Chemistry, Infectious Diseases, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, membrane Pentameric ligand-gated io., lipid-protein interactions, protein-lipid interaction sites, transmembrane domain, protein-lipid interactions, communication interface, lipid-like allosteric drugs, binding site, State-dependent protein-lipid inter., receptor state, pLGIC, lipid binding sites, receptor proteins, allosteric modulator ivermectin, dynamics simulations, glycine receptor, membrane environment, pentameric ligand-gated ion channel

Relation: https://figshare.com/articles/journal_contribution/Mean_duration_of_protein-lipid_contact_per_residue_for_inactive_and_active_state_/13920284

الاتاحة: https://doi.org/10.1371/journal.pcbi.1007856.s004

المؤلفون: Marc A. Dämgen (10131695), Philip C. Biggin (122818)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Neuroscience, Pharmacology, Biotechnology, Inorganic Chemistry, Infectious Diseases, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, membrane Pentameric ligand-gated io., lipid-protein interactions, protein-lipid interaction sites, transmembrane domain, protein-lipid interactions, communication interface, lipid-like allosteric drugs, binding site, State-dependent protein-lipid inter., receptor state, pLGIC, lipid binding sites, receptor proteins, allosteric modulator ivermectin, dynamics simulations, glycine receptor, membrane environment, pentameric ligand-gated ion channel

Relation: https://figshare.com/articles/journal_contribution/Trajectories_of_single_DOPS_molecules_in_the_membrane_plane_for_the_inactive_state_/13920278

الاتاحة: https://doi.org/10.1371/journal.pcbi.1007856.s002

المؤلفون: Marc A. Dämgen (10131695), Philip C. Biggin (122818)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Neuroscience, Pharmacology, Biotechnology, Inorganic Chemistry, Infectious Diseases, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, membrane Pentameric ligand-gated io., lipid-protein interactions, protein-lipid interaction sites, transmembrane domain, protein-lipid interactions, communication interface, lipid-like allosteric drugs, binding site, State-dependent protein-lipid inter., receptor state, pLGIC, lipid binding sites, receptor proteins, allosteric modulator ivermectin, dynamics simulations, glycine receptor, membrane environment, pentameric ligand-gated ion channel

Relation: https://figshare.com/articles/journal_contribution/Overlay_of_phospholipid_densities_at_the_ECD-TMD_interface_with_experimental_structures_/13920290

الاتاحة: https://doi.org/10.1371/journal.pcbi.1007856.s005

المؤلفون: Marc A. Dämgen (10131695), Philip C. Biggin (122818)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Neuroscience, Pharmacology, Biotechnology, Inorganic Chemistry, Infectious Diseases, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, membrane Pentameric ligand-gated io., lipid-protein interactions, protein-lipid interaction sites, transmembrane domain, protein-lipid interactions, communication interface, lipid-like allosteric drugs, binding site, State-dependent protein-lipid inter., receptor state, pLGIC, lipid binding sites, receptor proteins, allosteric modulator ivermectin, dynamics simulations, glycine receptor, membrane environment, pentameric ligand-gated ion channel

Relation: https://figshare.com/articles/journal_contribution/C_-RMSD_of_inactive_and_active_state_homology_models_in_fully_atomistic_simulations_/13920293

الاتاحة: https://doi.org/10.1371/journal.pcbi.1007856.s006

المؤلفون: Marc A. Dämgen (10131695), Philip C. Biggin (122818)

مصطلحات موضوعية: Biophysics, Biochemistry, Cell Biology, Molecular Biology, Neuroscience, Pharmacology, Biotechnology, Inorganic Chemistry, Infectious Diseases, Computational Biology, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, membrane Pentameric ligand-gated io., lipid-protein interactions, protein-lipid interaction sites, transmembrane domain, protein-lipid interactions, communication interface, lipid-like allosteric drugs, binding site, State-dependent protein-lipid inter., receptor state, pLGIC, lipid binding sites, receptor proteins, allosteric modulator ivermectin, dynamics simulations, glycine receptor, membrane environment, pentameric ligand-gated ion channel

Relation: https://figshare.com/articles/journal_contribution/Probability_densities_of_cholesterol_around_the_receptor_in_the_extracellular_and_intracellular_leaflet_for_the_inactive_and_active_state_obtained_with_position-restrained_approach_and_elastic_network_approach_/13920296

الاتاحة: https://doi.org/10.1371/journal.pcbi.1007856.s007

المؤلفون: Irena Roterman, Katarzyna Stapor, Piotr Fabian, Leszek Konieczny

المصدر: International Journal of Molecular Sciences; Volume 22; Issue 19; Pages: 10587

مصطلحات موضوعية: hydrophobicity, amyloid, water environment, micelle, membrane environment

جغرافية الموضوع: agris

وصف الملف: application/pdf

Relation: Molecular Informatics; https://dx.doi.org/10.3390/ijms221910587

الاتاحة: https://doi.org/10.3390/ijms221910587

المؤلفون: Xing-Qi Dong, Jing-Yu Lin, Peng-Fei Wang, Yi Li, Jian Wang, Bing Li, Jun Liao, Jun-Xia Lu

المصدر: Life; Volume 11; Issue 9; Pages: 908

مصطلحات موضوعية: membrane protein complex, functional state, native membrane environment, 1 H-detected solid-state NMR

جغرافية الموضوع: agris

وصف الملف: application/pdf

Relation: Proteins and Proteomics; https://dx.doi.org/10.3390/life11090908

الاتاحة: https://doi.org/10.3390/life11090908

المؤلفون: Irena Roterman, Katarzyna Stapor, Piotr Fabian, Leszek Konieczny, Mateusz Banach

المصدر: International Journal of Molecular Sciences; Volume 22; Issue 7; Pages: 3619

مصطلحات موضوعية: hydrophobicity, mechanosensitive channel, membrane, ion channel, water/membrane environment

جغرافية الموضوع: agris

وصف الملف: application/pdf

Relation: Molecular Informatics; https://dx.doi.org/10.3390/ijms22073619

الاتاحة: https://doi.org/10.3390/ijms22073619

المؤلفون: Rituparna Samanta, Jeffrey J. Gray

مصطلحات موضوعية: Biophysics, Biochemistry, Molecular Biology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, energy function franklin2023, dependent dielectric constant, capture electrostatic features, built upon franklin2019, different lipid bilayers, lipid layer, tilt angle, sequence recovery, realistic characteristics, protein orientation, method captures, membrane proteins, membrane environment, long time, length scales, implicit model, challenging due, boltzmann calculations

Relation: https://figshare.com/articles/figure/Features_of_electrostatic_potential_due_to_the_lipid_bilayers_in_the_membrane_/25043259

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011296.g001
https://figshare.com/articles/figure/Features_of_electrostatic_potential_due_to_the_lipid_bilayers_in_the_membrane_/25043259