المؤلفون: Camargo, Antonio Pedro, Roux, Simon, Schulz, Frederik, Babinski, Michal, Xu, Yan, Hu, Bin, Chain, Patrick SG, Nayfach, Stephen, Kyrpides, Nikos C

المصدر: Nature Biotechnology. 42(8)

مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Genetics, Networking and Information Technology R&D (NITRD), Good Health and Well Being, Interspersed Repetitive Sequences, Plasmids, Software, Databases, Genetic, Molecular Sequence Annotation, Genome, Viral, Viruses, Neural Networks, Computer, Computational Biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/96n6w63s
https://escholarship.org/content/qt96n6w63s/qt96n6w63s.pdf

المؤلفون: Frye, Katie A, Piamthai, Varadh, Hsiao, Ansel, Degnan, Patrick H

المصدر: Cell Reports. 37(13)

مصطلحات موضوعية: Infectious Diseases, Nutrition, Genetics, Underpinning research, 1.1 Normal biological development and functioning, Animals, Bacterial Proteins, Bacteroidetes, Corrinoids, Female, Gastrointestinal Microbiome, Humans, Interspersed Repetitive Sequences, Male, Membrane Transport Proteins, Mice, Mice, Inbred C57BL, Vitamin B 12, Vitamin B Complex, conjugative transposon, corrinoid, gut microbiome, horizontal gene transfer, integrative and conjugative element, mobile genetic element, phage, vitamin B12, Biochemistry and Cell Biology, Medical Physiology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/2vc289bc

المؤلفون: LeGault, Kristen N, Hays, Stephanie G, Angermeyer, Angus, McKitterick, Amelia C, Johura, Fatema-Tuz, Sultana, Marzia, Ahmed, Tahmeed, Alam, Munirul, Seed, Kimberley D

المصدر: Science. 373(6554)

مصطلحات موضوعية: Digestive Diseases, Emerging Infectious Diseases, Antimicrobial Resistance, Biotechnology, Genetics, Infectious Diseases, 5.1 Pharmaceuticals, Development of treatments and therapeutic interventions, Infection, Bacteriolysis, Cholera, Conjugation, Genetic, Drug Resistance, Bacterial, Epigenesis, Genetic, Feces, Gammaproteobacteria, Genes, Bacterial, Genes, Viral, Genome, Bacterial, Genome, Viral, Host Specificity, Humans, Interspersed Repetitive Sequences, Microbial Interactions, Myoviridae, Vibrio cholerae, Viral Proteins, General Science & Technology

URL الوصول: https://escholarship.org/uc/item/5c30t72m

المؤلفون: Netter, Zoe, Boyd, Caroline M, Silvas, Tania V, Seed, Kimberley D

المصدر: Nucleic Acids Research. 49(8)

مصطلحات موضوعية: Genetics, Infectious Diseases, Infection, Bacterial Proteins, Bacteriophages, Binding Sites, CRISPR-Cas Systems, Capsid Proteins, DNA, Satellite, DNA-Binding Proteins, Endonucleases, Gene Expression Regulation, Viral, Interspersed Repetitive Sequences, Operon, Protein Domains, Transduction, Genetic, Vibrio cholerae, Virion, Environmental Sciences, Biological Sciences, Information and Computing Sciences, Developmental Biology

URL الوصول: https://escholarship.org/uc/item/9x54c3tp

المؤلفون: Wyka, Stephen A, Mondo, Stephen J, Liu, Miao, Dettman, Jeremy, Nalam, Vamsi, Broders, Kirk D

المصدر: Genome Biology and Evolution. 13(2)

مصطلحات موضوعية: Microbiology, Biological Sciences, Evolutionary Biology, Genetics, Human Genome, Claviceps, Evolution, Molecular, Genes, Fungal, Genome, Fungal, Genomics, Host Specificity, Interspersed Repetitive Sequences, Molecular Sequence Annotation, Phylogeny, RIP, adaptive evolution, fungal plant pathogens, gene cluster expansion, Biochemistry and Cell Biology, Developmental Biology, Biochemistry and cell biology, Evolutionary biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/5664328g
https://escholarship.org/content/qt5664328g/qt5664328g.pdf

المؤلفون: Shivram, Haridha, Cress, Brady F, Knott, Gavin J, Doudna, Jennifer A

المصدر: Nature Chemical Biology. 17(1)

مصطلحات موضوعية: Biochemistry and Cell Biology, Biological Sciences, Genetics, Antibiosis, Archaea, Bacteria, Bacteriophages, CRISPR-Associated Protein 9, CRISPR-Cas Systems, Clustered Regularly Interspaced Short Palindromic Repeats, Gene Editing, Gene Expression Regulation, Archaeal, Gene Expression Regulation, Bacterial, Genetic Engineering, Humans, Interspersed Repetitive Sequences, RNA, Guide, CRISPR-Cas Systems, Medicinal and Biomolecular Chemistry, Biochemistry & Molecular Biology, Biochemistry and cell biology, Medicinal and biomolecular chemistry

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/840422qp
https://escholarship.org/content/qt840422qp/qt840422qp.pdf

المؤلفون: Wang, Yi, Pandey, Pramod K, Kuppu, Sundaram, Pereira, Richard, Aly, Sharif, Zhang, Ruihong

المصدر: PloS one. 16(8)

مصطلحات موضوعية: RNA, Ribosomal, 16S, Manure, Least-Squares Analysis, Bioreactors, Drug Resistance, Microbial, Anaerobiosis, Interspersed Repetitive Sequences, Genes, Bacterial, Nonlinear Dynamics, Dairying, Genetics, General Science & Technology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/2rs9b1xb
https://escholarship.org/content/qt2rs9b1xb/qt2rs9b1xb.pdf

المؤلفون: Shaiber, Alon, Willis, Amy D, Delmont, Tom O, Roux, Simon, Chen, Lin-Xing, Schmid, Abigail C, Yousef, Mahmoud, Watson, Andrea R, Lolans, Karen, Esen, Özcan C, Lee, Sonny TM, Downey, Nora, Morrison, Hilary G, Dewhirst, Floyd E, Mark Welch, Jessica L, Eren, A Murat

المصدر: Genome Biology. 21(1)

مصطلحات موضوعية: Clinical Research, Genetics, Human Genome, Dental/Oral and Craniofacial Disease, 2.2 Factors relating to the physical environment, 2.1 Biological and endogenous factors, Aetiology, Life Below Water, Adaptation, Physiological, Adult, Bacteria, Female, Genetic Markers, Genome, Bacterial, Humans, Interspersed Repetitive Sequences, Male, Metagenome, Metagenomics, Microbiota, Middle Aged, Mouth, Phylogeny, RNA, Ribosomal, 16S, Metapangenomics, Niche partitioning, Human oral cavity, Candidate phyla radiation, Saccharibacteria, Environmental Sciences, Biological Sciences, Information and Computing Sciences, Bioinformatics

URL الوصول: https://escholarship.org/uc/item/0wg2j6qj

المؤلفون: Seif, Yara, Choudhary, Kumari Sonal, Hefner, Ying, Anand, Amitesh, Yang, Laurence, Palsson, Bernhard O

المصدر: Proceedings of the National Academy of Sciences of the United States of America. 117(11)

مصطلحات موضوعية: Biological Sciences, Genetics, Prevention, Human Genome, Algorithms, Computer Simulation, Energy Metabolism, Genome, Bacterial, Genomics, Gram-Negative Bacteria, Host Microbial Interactions, Interspersed Repetitive Sequences, Metabolic Networks and Pathways, Metabolomics, Models, Biological, Nutrients, systems biology, mathematical modeling, auxotrophy, pangenome, comparative genomics

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/7jn7z2zb

المؤلفون: Ruslan Kalendar, Gennady I. Karlov

المصدر: Frontiers in Plant Science, Vol 14 (2023)

مصطلحات موضوعية: plant genome evolution, interspersed repetitive sequences, transposable element, retrotransposon, endogenous viral element, repeatome-based molecular markers, Plant culture, SB1-1110

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2023.1308536/full; https://doaj.org/toc/1664-462X

URL الوصول: https://doaj.org/article/7a352cd36f264924a038117a92978326

المؤلفون: McKitterick, Amelia, Hays, Stephanie, Johura, Fatema-Tuz, Alam, Munirul, Seed, Kim

المصدر: Cell Host & Microbe. 26(4)

مصطلحات موضوعية: Vibrio cholerae, cholera, defense, helicase, mobile genetic element, parasitism, phage, replication, satellite, Bacteriophages, Cholera, Chromosomes, Bacterial, DNA Helicases, Genome, Bacterial, Genome, Viral, Humans, Interspersed Repetitive Sequences, Vibrio cholerae, Viral Proteins

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/7c4581rs

المؤلفون: McKitterick, Amelia C, LeGault, Kristen N, Angermeyer, Angus, Alam, Munirul, Seed, Kimberley D

المصدر: Philosophical Transactions of the Royal Society B Biological Sciences. 374(1772)

مصطلحات موضوعية: Biological Sciences, Genetics, Digestive Diseases, Good Health and Well Being, Bacteriophages, CRISPR-Cas Systems, High-Throughput Nucleotide Sequencing, Interspersed Repetitive Sequences, Vibrio cholerae, CRISPR, phage, mobile genetic elements, cholera, Medical and Health Sciences, Evolutionary Biology, Biological sciences, Biomedical and clinical sciences

URL الوصول: https://escholarship.org/uc/item/46t2v4vh

المؤلفون: Zhou, Albert E, Berry, Andrea A, Bailey, Jason A, Pike, Andrew, Dara, Antoine, Agrawal, Sonia, Stucke, Emily M, Ouattara, Amed, Coulibaly, Drissa, Lyke, Kirsten E, Laurens, Matthew B, Adams, Matthew, Takala-Harrison, Shannon, Pablo, Jozelyn, Jasinskas, Algis, Nakajima, Rie, Niangaly, Amadou, Kouriba, Bourema, Kone, Abdoulaye K, Rowe, J Alexandra, Doumbo, Ogobara K, Thera, Mahamadou A, Patel, Jigar J, Tan, John C, Felgner, Philip L, Plowe, Christopher V, Travassos, Mark A

المصدر: mSphere. 4(2)

مصطلحات موضوعية: Infectious Diseases, Pediatric, Clinical Research, Rare Diseases, Malaria, Vector-Borne Diseases, 2.1 Biological and endogenous factors, Aetiology, Infection, Good Health and Well Being, Adolescent, Adult, Age Factors, Antibodies, Protozoan, Antigens, Protozoan, Child, Child, Preschool, Clinical Trials, Phase I as Topic, Clinical Trials, Phase II as Topic, Endemic Diseases, Female, Humans, Immunity, Innate, Infant, Interspersed Repetitive Sequences, Male, Mali, Middle Aged, Peptides, Plasmodium falciparum, Protein Array Analysis, Young Adult, RIFIN, STEVOR, malaria, microarrays, peptide, semiconserved domain, severe malaria, variant surface antigen, Plasmodium falciparum, Immunology, Microbiology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/80k709wn
https://escholarship.org/content/qt80k709wn/qt80k709wn.pdf

المؤلفون: McKitterick, Amelia C, Seed, Kimberley D

المصدر: Nature communications. 9(1)

مصطلحات موضوعية: Vibrio cholerae, Bacteriophages, Viral Proteins, DNA, Bacterial, Polymerase Chain Reaction, Genomics, Recombination, Genetic, Interspersed Repetitive Sequences, Conserved Sequence, Genome, Bacterial, Open Reading Frames, CRISPR-Cas Systems, Protein Domains, Genetics, Biotechnology, Infectious Diseases, Digestive Diseases, Foodborne Illness, Emerging Infectious Diseases

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/224384n0

المؤلفون: Ricci M., Peona V., Boattini A., Taccioli C.

المساهمون: Ricci M., Peona V., Boattini A., Taccioli C.

مصطلحات موضوعية: Cancer, Zoology, Interspersed repetitive sequences, Genetics, Mobile elements

وصف الملف: ELETTRONICO

Relation: info:eu-repo/semantics/altIdentifier/pmid/37270634; info:eu-repo/semantics/altIdentifier/wos/WOS:001000705300002; volume:13; issue:1; firstpage:1; lastpage:11; numberofpages:11; journal:SCIENTIFIC REPORTS; https://hdl.handle.net/11585/955120; info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85160884411

الاتاحة: https://hdl.handle.net/11585/955120
https://doi.org/10.1038/s41598-023-36006-6

المؤلفون: Reis, A.L.M., Rapadas, M., Hammond, J.M., Gamaarachchi, H., Stevanovski, I., Ayuputeri Kumaheri, M., Chintalaphani, S.R., Dissanayake, D.S.B., Siggs, O.M., Hewitt, A.W., Llamas, B., Brown, A., Baynam, G., Mann, G.J., McMorran, B.J., Easteal, S., Hermes, A., Jenkins, M.R., National Centre for Indigenous Genomics, Patel, H.R.

المصدر: http://dx.doi.org/10.1038/s41586-023-06842-7.

مصطلحات موضوعية: Genetic variation, Medical genomics, Next-generation sequencing, Structural variation, Humans, Genetics, Medical, Genomics, Interspersed Repetitive Sequences, Microsatellite Repeats, Alleles, Genome, Human, Australia, INDEL Mutation, Genetic Loci, Genomic Structural Variation, DNA Copy Number Variations, Datasets as Topic, Australian Aboriginal and Torres Strait Islander Peoples

وصف الملف: application/pdf

Relation: http://purl.org/au-research/grants/nhmrc/2011277; http://purl.org/au-research/grants/nhmrc/2021172; Nature, 2023; 624(7992):602-610; https://hdl.handle.net/2440/140525; Llamas, B. [0000-0002-5550-9176]; Brown, A. [0000-0003-2112-3918]

الاتاحة: https://hdl.handle.net/2440/140525
https://doi.org/10.1038/s41586-023-06842-7

المؤلفون: Salcedo, Andres, Rutter, William, Wang, Shichen, Akhunova, Alina, Bolus, Stephen, Chao, Shiaoman, Anderson, Nickolas, De Soto, Monica Fernandez, Rouse, Matthew, Szabo, Les, Bowden, Robert L, Dubcovsky, Jorge, Akhunov, Eduard

المصدر: Science. 358(6370)

مصطلحات موضوعية: Stem Cell Research - Nonembryonic - Non-Human, Infectious Diseases, Biotechnology, Stem Cell Research, Genetics, Infection, Good Health and Well Being, Basidiomycota, Disease Resistance, Genes, Plant, Genetic Variation, Host-Pathogen Interactions, Interspersed Repetitive Sequences, Plant Diseases, Triticum, Virulence, General Science & Technology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/6c94h2td

المؤلفون: Carnevali, Davide, Conti, Anastasia, Pellegrini, Matteo, Dieci, Giorgio

المصدر: DNA Research. 24(1)

مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Genetics, Biotechnology, Human Genome, 1.1 Normal biological development and functioning, 2.1 Biological and endogenous factors, Aetiology, Underpinning research, Generic health relevance, Computational Biology, Gene Expression Profiling, HeLa Cells, Humans, Interspersed Repetitive Sequences, Plasmids, Retroelements, Sequence Analysis, RNA, Transcription, Genetic, SINE, mammalian-wide interspersed repeats, RNA polymerase III, RNA-Seq, ENCODE, Hela Cells, Plant Biology & Botany

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/0ks1t162
https://escholarship.org/content/qt0ks1t162/qt0ks1t162.pdf

المؤلفون: Rocha, Eduardo, P. C., Bikard, David

المساهمون: Génomique évolutive des Microbes / Microbial Evolutionary Genomics, Institut Pasteur Paris (IP)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), Biologie de Synthèse - Synthetic biology, Université Paris Cité (UPCité)-Microbiologie Intégrative et Moléculaire (UMR6047), Institut Pasteur Paris (IP)-Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur Paris (IP)-Centre National de la Recherche Scientifique (CNRS), This study was funded by Agence Nationale de la Recherche (IBEID ANR-10-LABX-62-IBEID) (EPCR), Equipe Fondation pour la Recherche Médicale (EQU201903007835) (EPCR) and Agence Nationale de la Recherche (SALMOPROPHAGE, ANR-16-CE16-0029) (EPCR)., The authors thank Aude Bernheim, Frédérique Le Roux, and Maria Pilar Garcillan Barcia for comments and suggestions and Marie Touchon for discussions and graphical elements for the figures., ANR-10-LABX-0062,IBEID,Integrative Biology of Emerging Infectious Diseases(2010)

المصدر: ISSN: 1544-9173.

مصطلحات موضوعية: MESH: Archaea, MESH: Bacteria, MESH: Bacterial Physiological Phenomena, MESH: Bacteriophages, MESH: Gene Transfer, Horizontal, MESH: Interspersed Repetitive Sequences, MESH: Prophages, [SDV]Life Sciences [q-bio], [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology

Relation: info:eu-repo/semantics/altIdentifier/pmid/35025885; pasteur-03690954; https://pasteur.hal.science/pasteur-03690954; https://pasteur.hal.science/pasteur-03690954/document; https://pasteur.hal.science/pasteur-03690954/file/journal.pbio.3001514.pdf; PUBMED: 35025885; PUBMEDCENTRAL: PMC8791490

الاتاحة: https://pasteur.hal.science/pasteur-03690954
https://pasteur.hal.science/pasteur-03690954/document
https://pasteur.hal.science/pasteur-03690954/file/journal.pbio.3001514.pdf
https://doi.org/10.1371/journal.pbio.3001514

المؤلفون: Zhuang, Jiali, Wang, Jie, Theurkauf, William E., Weng, Zhiping

المساهمون: Program in Molecular Medicine, Program in Cell and Developmental Dynamics, Department of Biochemistry and Molecular Pharmacology, Program in Bioinformatics and Integrative Biology

المصدر: Nucleic acids research ; 42 ; 11 ; 6826-38

مصطلحات موضوعية: Algorithms, Animals, Drosophila melanogaster, Gene Expression, Genomics, Humans, Interspersed Repetitive Sequences, Polymorphism, Genetic, Biochemistry, Biophysics, and Structural Biology, Bioinformatics, Computational Biology, Integrative Biology, Systems Biology

Relation: Link to Article in PubMed; Nucleic Acids Res. 2014 Jun;42(11):6826-38. doi:10.1093/nar/gku323. Epub 2014 Apr 21. Link to article on publisher's site; 0305-1048 (Linking); http://hdl.handle.net/20.500.14038/25914; https://escholarship.umassmed.edu/cgi/viewcontent.cgi?article=1059&context=bioinformatics_pubs&unstamped=1; https://escholarship.umassmed.edu/bioinformatics_pubs/55; 7256014; bioinformatics_pubs/55

الاتاحة: https://doi.org/10.1093/nar/gku323
https://hdl.handle.net/20.500.14038/25914
https://escholarship.umassmed.edu/cgi/viewcontent.cgi?article=1059&context=bioinformatics_pubs&unstamped=1
https://escholarship.umassmed.edu/bioinformatics_pubs/55