المؤلفون: Singh, Babita

المساهمون: University/Department: Universitat Pompeu Fabra. Departament de Ciències Experimentals i de la Salut

Thesis Advisors: Eyras Jiménez, Eduardo

المصدر: TDX (Tesis Doctorals en Xarxa)

مصطلحات موضوعية: RNA alterations, Alternative splicing, Cancer, Genomics data, TCGA, Alteracions de l'ARN, Splicing alternatiu, Càncer, Dades genòmiques, Atles del Genoma del Càncer

وصف الملف: application/pdf

URL الوصول: http://hdl.handle.net/10803/572859

المؤلفون: Daniel Chafamo, Vignesh Shanmugam, Neriman Tokcan

المصدر: BMC Bioinformatics, Vol 25, Iss 1, Pp 1-28 (2024)

مصطلحات موضوعية: Tensor decomposition, Multimodal genomics data, Bayesian inference, Zero-inflated model, Factor analysis, Multi-sample multi-condition single-cell data, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1471-2105

URL الوصول: https://doaj.org/article/e5ac32a1a40a433182d8431c577780c9

المؤلفون: L'Yi, Sehi, van den Brandt, Astrid, Adams, Etowah, Nguyen, Huyen N., Gehlenborg, Nils

المصدر: L'Yi , S , van den Brandt , A , Adams , E , Nguyen , H N & Gehlenborg , N 2025 , ' Learnable and Expressive Visualization Authoring through Blended Interfaces ' , IEEE Transactions on Visualization and Computer Graphics , vol. 31 , no. 1 , 10670517 , pp. 459-469 . https://doi.org/10.1109/TVCG.2024.3456598

مصطلحات موضوعية: blended interfaces, genomics data visualization, Visualization authoring

وصف الملف: application/pdf

الاتاحة: https://research.tue.nl/en/publications/be497bfc-925f-430f-8d6d-d4237c433e37
https://doi.org/10.1109/TVCG.2024.3456598
https://pure.tue.nl/ws/files/347526632/Learnable_and_Expressive_Visualization_Authoring_Through_Blended_Interfaces.pdf
http://www.scopus.com/inward/record.url?scp=85203976427&partnerID=8YFLogxK

المؤلفون: van den Brandt, Astrid, L'Yi, Sehi, Nguyen, Huyen N., Vilanova, Anna, Gehlenborg, Nils

المصدر: van den Brandt , A , L'Yi , S , Nguyen , H N , Vilanova , A & Gehlenborg , N 2025 , ' Understanding Visualization Authoring Techniques for Genomics Data in the Context of Personas and Tasks ' , IEEE Transactions on Visualization and Computer Graphics , vol. 31 , no. 1 , 10681582 , pp. 1180-1190 . https://doi.org/10.1109/TVCG.2024.3456298

مصطلحات موضوعية: genomics data visualization, User interviews, visual probes, visualization authoring

وصف الملف: application/pdf

الاتاحة: https://research.tue.nl/en/publications/7ff33c35-36ef-4af0-a268-fbc304adb73a
https://doi.org/10.1109/TVCG.2024.3456298
https://pure.tue.nl/ws/files/347527136/Understanding_Visualization_Authoring_Techniques_for_Genomics_Data_in_the_Context_of_Personas_and_Tasks.pdf
http://www.scopus.com/inward/record.url?scp=85204621242&partnerID=8YFLogxK

المؤلفون: Zhang, Lihua, Nie, Qing

المصدر: Genome Biology. 22(1)

مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Genetics, Human Genome, 1.4 Methodologies and measurements, Generic health relevance, Algorithms, Chromatin Immunoprecipitation Sequencing, Databases, Genetic, Epigenomics, Genomics, Sequence Analysis, RNA, Single-Cell Analysis, Transcriptome, Single-cell genomics data, Data integration, Biological variation, Technical variation, Batch effect removal, Single-cell genomics data, Data integration, Biological variation, Technical variation, Batch effect removal, Environmental Sciences, Information and Computing Sciences, Bioinformatics

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/9jq7g6xw
https://escholarship.org/content/qt9jq7g6xw/qt9jq7g6xw.pdf

المؤلفون: Daniele Dall’Olio, Eric Sträng, Amin T. Turki, Jesse M. Tettero, Martje Barbus, Renate Schulze-Rath, Javier Martinez Elicegui, Tommaso Matteuzzi, Alessandra Merlotti, Luciana Carota, Claudia Sala, Matteo G. Della Porta, Enrico Giampieri, Jesús María Hernández-Rivas, Lars Bullinger, Gastone Castellani

مصطلحات موضوعية: Genetics, Biotechnology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, standard workflow used, proposes alternative approaches, priori clinical knowledge, perform patients assignments, enhance genomic stratifications, driven classification systems, +onco%22">xlink "> onco, patients assignment using, improve patient stratification, hematology , based approach emerges, work unfolds, sole role, simulated data, preferred method, likely component, hematological studies, good trade, genomics data, gene mutations, essentially determine, cytogenetics anomalies, common refinement, central hypergeometric, blood cancer

Relation: https://figshare.com/articles/journal_contribution/Supporting_materials_and_methods_/25136746

الاتاحة: https://doi.org/10.1371/journal.pcbi.1011299.s001
https://figshare.com/articles/journal_contribution/Supporting_materials_and_methods_/25136746

المؤلفون: Christiansen,Jeff, Hall,Kathryn

المصدر: Biodiversity Information Science and Standards 7: e112274

مصطلحات موضوعية: data resources, indexing service, genomics data, genetic data, sustainability

وصف الملف: text/html

Relation: info:eu-repo/semantics/altIdentifier/eissn/2535-0897

الاتاحة: https://doi.org/10.3897/biss.7.112274
https://biss.pensoft.net/article/112274/

المؤلفون: William C. Cho, Jordi Pérez-Tur, Rosalba Giugno, Mehdi Pirooznia, Kathleen Boris-Lawrie, Dov Greenbaum, Mojgan Rastegar, Rui Henrique, Peng Xu, Joao Batista Teixeira da Rocha, Blanka Rogina

المصدر: Frontiers in Genetics, Vol 14 (2023)

مصطلحات موضوعية: genetics, genomics, Frontiers in genetics, human physiology, genomics data analysis, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2023.1192071/full; https://doaj.org/toc/1664-8021

URL الوصول: https://doaj.org/article/e69dbf7330d24208b44046818bd7cc2d

المؤلفون: Rae, Sally

المصدر: Otago daily times, 17 Jun 2023; p.12

URL الوصول: https://ndhadeliver.natlib.govt.nz/delivery/DeliveryManagerServlet?dps_pid=IE87946330

المؤلفون: Lihua Zhang, Qing Nie

المصدر: Genome Biology, Vol 22, Iss 1, Pp 1-28 (2021)

مصطلحات موضوعية: Single-cell genomics data, Data integration, Biological variation, Technical variation, Batch effect removal, Biology (General), QH301-705.5, Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1474-760X

URL الوصول: https://doaj.org/article/2edd913fe7034281a3c8675663f3470c

المؤلفون: Daniyar Karabayev, Askhat Molkenov, Kaiyrgali Yerulanuly, Ilyas Kabimoldayev, Asset Daniyarov, Aigul Sharip, Ainur Seisenova, Zhaxybay Zhumadilov, Ulykbek Kairov

المصدر: PeerJ, Vol 9, p e11333 (2021)

مصطلحات موضوعية: Genome analysis, Genomics, Bioinformatics, Genomics data mining, NGS data analysis, Variant call format, Medicine, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://peerj.com/articles/11333.pdf; https://peerj.com/articles/11333/; https://doaj.org/toc/2167-8359

URL الوصول: https://doaj.org/article/6d6c900c57d8484a8e42b2d852198931

المؤلفون: Scott Hazelhurst, Gerrit Botha, Shaun Aron, Ayton Meintjes, Suresh Maslamoney, Sumir Panji, Mamana Mbiyavanga

مصطلحات موضوعية: Bioinformatics, Gene Expression (incl. Microarray and other genome-wide approaches), Genomics, Genetic, genomics data sets, bioinformatics pipeline, Nucleic acid analysis

Relation: https://figshare.com/articles/educational_resource/H3Africa_Genotyping_Chip_Data_Analysis_and_GWAS_workshop_2018_Training_Videos/19106897

الاتاحة: https://doi.org/10.25375/uct.19106897.v1
https://figshare.com/articles/educational_resource/H3Africa_Genotyping_Chip_Data_Analysis_and_GWAS_workshop_2018_Training_Videos/19106897

المؤلفون: Cameron Ogle, David Reddick, Coleman McKnight, Tyler Biggs, Rini Pauly, Stephen P. Ficklin, F. Alex Feltus, Susmit Shannigrahi

المصدر: Frontiers in Big Data, Vol 4 (2021)

مصطلحات موضوعية: genomics data, genomics workflows, large science data, cloud computing, named data networking, Information technology, T58.5-58.64

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fdata.2021.582468/full; https://doaj.org/toc/2624-909X

URL الوصول: https://doaj.org/article/95cc455b41bb42f69de9c301dcda8788

المؤلفون: Salvatore Benfatto (669603), Özdemirhan Serçin (11351580), Francesca R. Dejure (11351583), Amir Abdollahi (14512), Frank T. Zenke (6658220), Balca R. Mardin (7607312)

مصطلحات موضوعية: Biochemistry, Medicine, Cell Biology, Genetics, Molecular Biology, Pharmacology, Biotechnology, Marine Biology, Cancer, Hematology, Virology, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, uncovering cancer vulnerabilities, tumor suppressor cdkn2a, show experimental validation, results suggest brip1, potential therapeutic target, machine learning prediction, interacting protein brip1, improving cancer therapy, identify cancer vulnerabilities, express low levels, machine learning approach, cancer genomics data, cancer dependency map, aldehyde dehydrogenase aldh2, results using paris, crispr viability screens

Relation: https://figshare.com/articles/journal_contribution/Additional_file_5_of_Uncovering_cancer_vulnerabilities_by_machine_learning_prediction_of_synthetic_lethality/16529955

الاتاحة: https://doi.org/10.6084/m9.figshare.16529955.v1

المؤلفون: Tobias Kockmann (8371914), Christian Panse (163365)

مصطلحات موضوعية: Biochemistry, Physiology, Ecology, Inorganic Chemistry, Science Policy, Biological Sciences not elsewhere classified, Information Systems not elsewhere classified, novel package rawrr, use cases, genomics data analysis, Thermo Fisher Scientific, R package rawDiag, API, data access, Orbitrap Data, mass spectrometry, metadata analysis, research tasks, Bioconductor project, Methods 2015, analysis workflows, OS-independent access, rawrr R Package, MassIVE data, MSV 000086542. Availability, demonstration purposes, Proteome Res, implementation details, rawrr package, Direct Access

Relation: https://figshare.com/articles/journal_contribution/The_rawrr_R_Package_Direct_Access_to_Orbitrap_Data_and_Beyond/14185915

الاتاحة: https://doi.org/10.1021/acs.jproteome.0c00866.s001

المؤلفون: Karabayev, Daniyar, Molkenov, Askhat, Yerulanuly, Kaiyrgali, Kabimoldayev, Ilyas, Daniyarov, Asset, Sharip, Aigul, Seisenova, Ainur, Zhumadilov, Zhaxybay, Kairov, Ulykbek

مصطلحات موضوعية: Type of access: Open Access, Genome analysis, Genomics, Bioinformatics, Genomics data mining, NGS data analysis, Variant call format, VCF

Relation: Karabayev, D., Molkenov, A., Yerulanuly, K., Kabimoldayev, I., Daniyarov, A., Sharip, A., Seisenova, A., Zhumadilov, Z., & Kairov, U. (2021). re-Searcher: GUI-based bioinformatics tool for simplified genomics data mining of VCF files. PeerJ, 9, e11333. https://doi.org/10.7717/peerj.11333; http://nur.nu.edu.kz/handle/123456789/6809

الاتاحة: http://nur.nu.edu.kz/handle/123456789/6809

المؤلفون: Baltoumas, Fotis A., Zafeiropoulou, Sofia, Karatzas, Evangelos, Koutrouli, Mikaela, Thanati, Foteini, Voutsadaki, Kleanthi, Gkonta, Maria, Hotova, Joana, Kasionis, Ioannis, Hatzis, Pantelis, Pavlopoulos, Georgios A.

المصدر: Baltoumas , F A , Zafeiropoulou , S , Karatzas , E , Koutrouli , M , Thanati , F , Voutsadaki , K , Gkonta , M , Hotova , J , Kasionis , I , Hatzis , P & Pavlopoulos , G A 2021 , ' Biomolecule and Bioentity Interaction Databases in Systems Biology : A Comprehensive Review ' , Biomolecules , vol. 11 , no. 8 , 1245 . https://doi.org/10.3390/biom11081245

مصطلحات موضوعية: biomedical networks, associations, biological interactions, network biology, databases, data integration, MANUALLY CURATED DATABASE, PROTEIN-PROTEIN INTERACTIONS, GENOMICS DATA SETS, ENRICHMENT ANALYSIS, WEB SERVER, NETWORK ANALYSIS, NONCODING RNAS, INTEGRATIVE ANALYSIS, TOPOLOGICAL ANALYSIS, LIGAND INTERACTIONS

وصف الملف: application/pdf

الاتاحة: https://researchprofiles.ku.dk/da/publications/biomolecule-and-bioentity-interaction-databases-in-systems-biology(53f511f9-ae65-4d7a-9fc0-adb000c9cc5d).html
https://doi.org/10.3390/biom11081245
https://curis.ku.dk/ws/files/279259365/biomolecules_11_01245.pdf

المؤلفون: Barbara K. Dunn, Daoud Meerzaman

المصدر: Frontiers in Oncology, Vol 10 (2020)

مصطلحات موضوعية: big data, cancer genomics, cancer genomics data analysis, HPC (high performance computing), humanizing big data, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fonc.2020.01201/full; https://doaj.org/toc/2234-943X

URL الوصول: https://doaj.org/article/c01449f4d8c248f9827f20151a4aac86

المؤلفون: D'Anna, Flora, Droesbeke, Bert

المصدر: Empowering Biodiversity Research III, Leiden, 26th of March 2024

مصطلحات موضوعية: ENA, data submission, brokering, genomics data, publishing data, Omics data, data deposition

Relation: https://zenodo.org/communities/elixir-be; https://doi.org/10.5281/zenodo.10886731; https://doi.org/10.5281/zenodo.10886732; oai:zenodo.org:10886732

الاتاحة: https://doi.org/10.5281/zenodo.10886732

المؤلفون: Sladký, Ondřej

المساهمون: Veselý, Pavel, Medvedev, Paul, Břinda, Karel

مصطلحات موضوعية: k-mer sets|bioinformatics|computational genomics|data structures|algorithms|shortest superstring problem, množiny k-merů|bioinformatika|výpočetní genomika|datové struktury|algoritmy|problém nejkratšího nadřetězce

وصف الملف: application/pdf; application/zip

Relation: http://hdl.handle.net/20.500.11956/192064; 261607

الاتاحة: https://hdl.handle.net/20.500.11956/192064